BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946154
Length=898
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20100.1 | Symbols: | PQ-loop repeat family protein / trans... 1221 0.0
AT2G41050.1 | Symbols: | PQ-loop repeat family protein / trans... 484 5e-136
> AT4G20100.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr4:10873999-10874865 REVERSE LENGTH=867
Length=867
Score = 1221 bits (661), Expect = 0.0
Identities = 789/850 (93%), Gaps = 11/850 (1%)
Strand=Plus/Plus
Query 21 ATGTTTCGAGATGAATTGTCATTATCTCTTGGTATCATCAGTGTTATTAGTTGGAGTGTT 80
||| |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGATTCGAGATGATTTGTCACTATCTCTTGGTATCATCAGTGTTATCAGTTGGAGTGTT 60
Query 81 GCCGAGATACCGCAGATTATGACTAACTACAGT-AACAAATCCATTGAAGGTGTCTCTAT 139
||||||||||||||||||||||||||||||| | || || ||||||||||| ||||||||
Sbjct 61 GCCGAGATACCGCAGATTATGACTAACTACAATCAA-AAGTCCATTGAAGGAGTCTCTAT 119
Query 140 AGCCTTCTTAACGACATGGATGCTTGGAGATATCTTTAATGTTGTTGGTTGCTTGATGGA 199
| |||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 120 AACCTTCTTAACAACATGGATGCTTGGTGATATCTTTAATGTTGTTGGCTGCTTGATGGA 179
Query 200 ACCAGCTAGTCTTCCAGTACAATTCTACACGGCAGTGTTGTATACACTGGCTACACTTGT 259
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 180 ACCAGCTAGTCTTCCAGTTCAATTCTACACGGCAGTGTTGTATACTCTGGCTACACTTGT 239
Query 260 TCTCTATGTTCAATCTATATATTACGGGCATATTTACCCGCGGTTGATGAAAAACCGAAG 319
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCTCTATGTTCAATCTATATACTACGGGCATATTTACCCGCGGTTGATGAAAAACCGAAG 299
Query 320 GAATCATCATCATGTGGTTGATGTGGAACAGCCTTTGCTTCATGAGGAAGCTAAGCGTCC 379
||||||||| | |||||||||| ||| |||||||||||| ||| ||||||||||||||
Sbjct 300 GAATCATCA-GA--TGGTTGATGTAGAAGAGCCTTTGCTTCGTGAAGAAGCTAAGCGTCC 356
Query 380 TTCTACCAAATCGATGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAATTT 439
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 357 TTCTACCAAATCGTTGCTATGTGTGGTCTCGGTGTTCTTGTTTCTTGGATCATTCAACGT 416
Query 440 GTTAAGTGGATCAAGAAGTATGGATTTGAGAGAGAAAGATAGAGTGTTTGCAGTT----G 495
|| ||||| |||||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct 417 ATTGAGTGGTTCAAGAAGTATGGATTTGAGAGGGAAAGATAGAGTGTTTGTAGTTGGAGG 476
Query 496 -G-AGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGAAAGTAGCGATAT 553
| ||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 477 AGCAGGAGCAAGAAAGCTTTTGGAGGTCTCTAGCGGTAACTTAGGAGAAAACAACAATAT 536
Query 554 CGGAATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAAT 613
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 TGGAATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAAT 596
Query 614 ATGTATGAATATAAGAAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGC 673
|||||||||| |||| |||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 597 ATGTATGAATGTAAGGAGAGGAAATGTTGAGGGATTGAATCCATTAATGTTCTTCTTTGC 656
Query 674 ATTCGTTGGCAATGTGACTTATGTTGCAAGCATACTTGTGAACAGTGTCGAATGGTCGAA 733
|||| ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 657 ATTCATTGGCAATGTGACTTATGTTGCAAGCATACTAGTGAACAGCGTCGAATGGTCGAA 716
Query 734 AATCGAACCAAATCTACCATGGCTTGTTGATTCTGGAGGATGTGCTGTGCTTGATTTTCT 793
||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||
Sbjct 717 AATCGAACCGAATCTACCATGGCTAGTTGATTCAGGAGGATGTGCTGTTCTTGATTTTCT 776
Query 794 TATTCTGCTTCAGtttttttACTTTGGCTGTCGCAAAGTCGAGAAAGATTCCGACAAGAA 853
|||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||||
Sbjct 777 TATTCTGCTTCAGTTTTTCTACTTTCACTGTCGCAAAGTCGAGGCAGATTCCGTCAAGAA 836
Query 854 GAAGCATGAA 863
||||||||||
Sbjct 837 GAAGCATGAA 846
> AT2G41050.1 | Symbols: | PQ-loop repeat family protein / transmembrane
family protein | chr2:17123190-17126349 REVERSE LENGTH=1545
Length=1545
Score = 484 bits (262), Expect = 5e-136
Identities = 458/547 (84%), Gaps = 35/547 (6%)
Strand=Plus/Plus
Query 345 GAACAGCCTTTGCTTCATGAGGAAGCT-AAGCGTCCTTCTACCAAATCGA-TGCTATGTG 402
||| |||| ||||||| |||||| | | | || |||||| |||||||| | |||| || |
Sbjct 790 GAAGAGCCCTTGCTTCCTGAGGATG-TCACGCATCCTTCCACCAAATC-ATTGCTTTGCG 847
Query 403 TGGTCTCGGTGTTCTTGTTTCTTGG-A-A--C-A--TT--CAATTTGTTAAGTGGATCAA 453
||||||||||||||||||||||||| | | | | || ||||||| |||||| |||||
Sbjct 848 TGGTCTCGGTGTTCTTGTTTCTTGGAACATTCAACCTTCCCAATTTGCTAAGTGAATCAA 907
Query 454 GAAGTATGGATTTGAGAGAGAAAGATAGAGTGTTTGCAGTTGGAGGAGCAAGAAAGCTTT 513
||| ||||| |||| | ||| ||||||||| |||| |||| ||| ||||||||||||||
Sbjct 908 GAACTATGGCTTTGGGTGAGGGAGATAGAGTATTTGTAGTTCGAGCAGCAAGAAAGCTTT 967
Query 514 TGGAGGTCTCTAGC-G----GT-----AACTTA-----GGAGAAAGTAGC-GATATCGGA 557
|| ||||| ||||| | || ||| || |||||||| ||| || || |||
Sbjct 968 TGCAGGTCACTAGCAGCAACGTAGCAGAACATAGCGGTGGAGAAAGCAGCAGA-ATTGGA 1026
Query 558 ATGTGGTTGGGTTGGGCAATGGCGGCGATTTACATGGGTGGAAGGCTTCCTCAAATATGT 617
|||| ||||||||||||||||| || || |||||||||||||||||||| |||||||||
Sbjct 1027 ATGTTTTTGGGTTGGGCAATGGCAGCCATATACATGGGTGGAAGGCTTCCCCAAATATGT 1086
Query 618 ATGAATATAAGAAGAGGACATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCATTC 677
| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 CTCAATATGAGGAGAGGGCATGTTGAGGGATTGAATCCATTGATGTTCTTCTTTGCATTA 1146
Query 678 GTTGGCAATGTGACTTATGTTGCAAGCATACTTGTGAACAGTGTCGAATGGTCGAAAA-T 736
||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||| |
Sbjct 1147 GTTGGCAATATGACTTATGTTGCAAGCATACTCGTGAACAGTGTCGAATGGTT-AAAACT 1205
Query 737 CGAACCAAATCTACCATGGCTTGTTGATTCTGGAGGATGTGCTGTGCTTGATTTTCTTAT 796
| ||| ||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 1206 TGCACCGAATCTACCATGGCTTGTTGATGCAGGAGGATGTGTTGTGCTTGATTTTCTTAT 1265
Query 797 TCTGCTTCAGtttttttACTTTGGCTGTCGCAAAGTCGAGAAAGATTCCGACAAGAAGAA 856
||||||||||||||| |||| |||||||||||| | | || ||| | |||||||||||
Sbjct 1266 TCTGCTTCAGTTTTTCCACTTCCGCTGTCGCAAAGAC-A-AA-GATACTGACAAGAAGAA 1322
Query 857 GCATGAA 863
|||||||
Sbjct 1323 GCATGAA 1329
Score = 335 bits (181), Expect = 5e-91
Identities = 251/285 (88%), Gaps = 4/285 (1%)
Strand=Plus/Plus
Query 24 TTTCGAGATGAATTGTCATTATCTCTTGGTATCATCAGTGTTATTAGTTGGAGTGTTGCC 83
||| |||||| ||||||||| ||||||||||||||||||||||| |||||| |||||||
Sbjct 235 TTTAGAGATGGATTGTCATTGTCTCTTGGTATCATCAGTGTTATCAGTTGGGGTGTTGCT 294
Query 84 GAGATACCGCAGATTATGACTAACTACAGTAACAAATCCATTGAAGGTGTCTCTA-TAGC 142
|||||||| |||||||||||||| |||||| | ||||||| ||||||| |||||| || |
Sbjct 295 GAGATACCTCAGATTATGACTAATTACAGTGAGAAATCCACTGAAGGTCTCTCTATTA-C 353
Query 143 CTTCTTAACGACATGGATGCTTGGAGATATCTTTAATGTTGTTGGTTGCTTGATGGAACC 202
||||||||| || |||||| |||| |||||||| ||| || |||| ||||||||||||||
Sbjct 354 CTTCTTAACAACGTGGATGATTGGGGATATCTTCAATCTTCTTGGCTGCTTGATGGAACC 413
Query 203 AGCTAGTCTTCCAGTACAATTCTACACGGCAGTGTTGTATACACTGGCTACACT-TGTTC 261
||||| ||||||| ||||||||||| |||| ||||||||||| || ||||| | ||||
Sbjct 414 AGCTACTCTTCCAACACAATTCTACATGGCACTGTTGTATACAGTGACTACA-TCAGTTC 472
Query 262 TCTATGTTCAATCTATATATTACGGGCATATTTACCCGCGGTTGA 306
||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 473 TCTATGTTCAATCTATATATTACGGCCATATCTACCCGCGGTTGA 517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43854410331
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5