BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946158
Length=1630
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20070.1 | Symbols: ATAAH, AAH | allantoate amidohydrolase |... 2507 0.0
> AT4G20070.1 | Symbols: ATAAH, AAH | allantoate amidohydrolase
| chr4:10861455-10864696 FORWARD LENGTH=1838
Length=1838
Score = 2507 bits (1357), Expect = 0.0
Identities = 1544/1632 (95%), Gaps = 22/1632 (1%)
Strand=Plus/Plus
Query 4 CTCTTCAATCGGCAGCCATGGTGGttcctcatccttcttcctcctcctctagatctcatc 63
||||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 77 CTCTTAAATCGGCAGCCATGGCGGTTCCTCATCCTTCTTCTTCCTCCTCTAGATCTCATC 136
Query 64 ctttcctctccCATGTCTATCACACTAGCTTccatcttcatcatcataaccatcaccatc 123
|||||||||||||||||||||||||||||||||| |||||||||| ||| |||
Sbjct 137 CTTTCCTCTCCCATGTCTATCACACTAGCTTCCA---TCATCATCAT---CAT---CAT- 186
Query 124 aacatcatcatccatcGCTTGTACTCTTTTGGTgtctcgtgttttctctgttatctcctc 183
| |||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||
Sbjct 187 ---A--ATCATCCATCGCTTGTGCTCTTCTGGTGCCTCGTGTTTTCTCTATTATCTCCTC 241
Query 184 tcgctctctcctcttcatcgtcgtcgtcttcttcttcctc-ta--cgtcgtcatcgtcat 240
|||||||||| || ||||| ||||| |||||||||||||| | |||||||||| || |
Sbjct 242 TCGCTCTCTCATCATCATCTTCGTCTTCTTCTTCTTCCTCAGACTCGTCGTCATCATCGT 301
Query 241 cttctcaaatctctctt-GGAATCGGTGAAACAGAAGTGACAAAGCATGATCTGCATCAG 299
| || || |||||| || ||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 302 CCTCCCATATCTCT-TTAGGAATCGGTGAAACAGAAGGGACGAAGCATGATCTGCATCAG 360
Query 300 GCGATCCTAAGGGACGAAGCTGTAGCAAGGTTACACGAGCTTGGACAGGTGAGTGATGCA 359
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 GCGATCCTAAGGGACGAAGCTGTAGCAAGATTACACGAGCTTGGACAGGTGAGTGATGCA 420
Query 360 GTTGCCCATC-TAGAAAGGACTTTTATGAGTCCAGCATCAATAAGAGCGATAGATCTTAT 418
| | |||| | |||| ||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct 421 GCTACCCA-CTTAGAGAGGACTTTTATGAGTCCAGCATCCATAAGAGCAATACCTCTTAT 479
Query 419 CCGTCGATGGATGGAAGATGCTGGTTTATCAACATGGGTTGATTACATGGGAAATGTGCA 478
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 480 CCGTGGATGGATGGAAGATGCCGGTTTATCAACATGGGTTGATTACATGGGAAATGTACA 539
Query 479 TGGTCGAGTGGAACCAAAGAATGGAAGCTCACAGGCTCTTCTAATTGGTTCCCATATGGA 538
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 TGGTCGAGTGGAACCTAAGAATGGAAGTTCACAGGCTCTTCTAATTGGTTCCCATATGGA 599
Query 539 CACAGTGATCGATGCTGGTAAATATGATGGCTCACTAGGCATCATTTCTGCAATCTCTGC 598
||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 600 CACTGTGATTGATGCTGGTAAATATGATGGCTCATTAGGCATCATTTCTGCAATCTCTGC 659
Query 599 ATTGAAGGTTCTGAAAATAAATGGAAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 658
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 660 ATTGAAGGTTCTGAAAATAGATGGGAGATTGGGAGAACTAAAGCGGCCTGTTGAGGTGAT 719
Query 659 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGCGTTTAGTGATGAGGAAGGAGTGAGGTTTCAGTCTACTTTCCTAGGCAGTGCTGCTTT 779
Query 719 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGCTGGAATCATGCCAGTTTCTCGGTTGGAGGTTACTGATAAAAGTGGTATTTCTGTGCA 839
Query 779 AGATGCTCTTAAAGAGAACTCCATAGACATAACAGAGGAAAACTTAATGCAGCTGAAGTA 838
||||||||||||||||||||| |||||||||||||| |||||||| |||||| |||||||
Sbjct 840 AGATGCTCTTAAAGAGAACTCTATAGACATAACAGATGAAAACTTGATGCAGTTGAAGTA 899
Query 839 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATCGAGCAAGGGCCGGTGCTTGA 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TGATCCTGCATCTGTTTGGGGATATGTAGAGGTTCACATTGAGCAAGGGCCGGTGCTTGA 959
Query 899 ATGGGTTGGTTATCCTTTAGGAGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 958
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 ATGGGTTGGTTATCCTTTAGGTGTAGTAAAAGGAATTGCAGGACAGACAAGACTCAAGGT 1019
Query 959 TACTGTTAAAGGCTCTCAAGGACATGCTGGAACAGTTCCAATGTCACTGCGTCAAGACCC 1018
|||||| ||||| ||||||||||||||||| ||||||||||||||| ||||||| |||||
Sbjct 1020 TACTGTAAAAGGATCTCAAGGACATGCTGGTACAGTTCCAATGTCAATGCGTCAGGACCC 1079
Query 1019 TATGACTGGTGCCGCGGAGCTGATTGTACTATTGGAAAGCGTTTGCAAAAACCCTAAAGA 1078
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 TATGACTGGTGCTGCGGAGCTGATTGTACTATTGGAAAGTGTTTGCAAAAACCCTAAAGA 1139
Query 1079 TTACTTATCTTGCAACGGTCAATGCAACGAAGACACAATAGAATCCCTTGCTAATTCACT 1138
||||||||||||||||| |||||||||||| || ||| ||||||||||||||||||||||
Sbjct 1140 TTACTTATCTTGCAACGTTCAATGCAACGAGGATACAGTAGAATCCCTTGCTAATTCACT 1199
Query 1139 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 TGTTTGTACTGTTGGAGAGATCTCAACATGGCCAAGTGCTAGCAATGTCATCCCAGGCCA 1259
Query 1199 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 GGTAACTTTCACTGTGGATTTACGTACGATAGATGATGTAGGACGCAAGGCTATTCTCCA 1319
Query 1259 TGACTTATCAACTAGGATGTACAAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1318
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1320 TGACTTATCAACTAGGATGTACCAGATATGTGACAAAAGATCGCTTTTGTGCTCCATTGA 1379
Query 1319 ACGCAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTCACAGCTGAAATC 1378
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1380 ACGAAAGCACGATGCAGACGCAGTAATGTCAGACCCGCAATTGAGTTTACAGCTGAAATC 1439
Query 1379 AGCAGGTCAGAGTGCACTTAAGAAAATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1438
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1440 AGCAGCTCAGAGTGCACTTAAGAAGATGACAGGAGAGGTTCAAGACGAGGTCCCCGTGCT 1499
Query 1439 AATGAGTGGAGCAGGACATGATGCTATGGCTATGGCTCATTTAACTAAGGTGGGAATGTT 1498
|||||||||||||||||||||||| ||||||||||| || ||||| ||||||||||||||
Sbjct 1500 AATGAGTGGAGCAGGACATGATGCAATGGCTATGGCACACTTAACCAAGGTGGGAATGTT 1559
Query 1499 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTGTTAGATGACGA 1558
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1560 GTTTGTCCGGTGTCGTGGAGGAATAAGTCATTCTCCGGCAGAACATGTATTGGATGACGA 1619
Query 1559 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAG 1618
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 TGTTGGTGCAGCCGGTTTGGCCATCTTGGAGTTTCTAGAGTCTCAAATGTAAAACATGAC 1679
Query 1619 AAATATATGAGA 1630
||||||||||||
Sbjct 1680 AAATATATGAGA 1691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80521674180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5