BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946162
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein... 998 0.0
> AT4G20040.1 | Symbols: | Pectin lyase-like superfamily protein
| chr4:10847299-10849115 REVERSE LENGTH=1653
Length=1653
Score = 998 bits (540), Expect = 0.0
Identities = 755/859 (88%), Gaps = 13/859 (2%)
Strand=Plus/Plus
Query 427 GGATCTTCTATGAGGATTTGACCTTCCGAGACATTCTGTTCGACTCAAGCTTCCGAGGCG 486
||||||||||||||||| ||||||||| ||| |||| ||||||||||| |||||||| |
Sbjct 712 GGATCTTCTATGAGGATGTGACCTTCCAAGATGTTCTCTTCGACTCAAGATTCCGAGGAG 771
Query 487 GGGGTATTTTTGTAACTGACTCAGCTCGTATCCGCATAACCGATTGCTACTTCCTCCATT 546
| |||||||| || | |||||||||||||||||| |||||| |||| || ||||||||||
Sbjct 772 GTGGTATTTTGGTGATTGACTCAGCTCGTATCCGTATAACCAATTGTTATTTCCTCCATT 831
Query 547 TCACAACTCAGGGGATTAAAAT-CAAGGGTGGCCACGAGACATACATTTCAAACTCCTTT 605
||||||| || ||||||||| | ||| || || || |||||||||||||||||||||||
Sbjct 832 TCACAACGCAAGGGATTAAAGTCCAA-GGAGGTCATGAGACATACATTTCAAACTCCTTC 890
Query 606 TTGGGGCAACGTTCAACGGTAGGTGGAGACCCACAAGAAATAAAG-TTTTCCAGGACAGG 664
|||||||||| |||||||||||| |||||| | |||||| | | ||| | |||||||
Sbjct 891 TTGGGGCAACATTCAACGGTAGGAGGAGACAGAGAAGAAA-GAGGATTTACTGGGACAGG 949
Query 665 AATCGATATCTCAAGTAACGATAATGCCATTACAAATGTAGTGATTTTCTCGGCTGGGAT 724
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 950 AATCGATATCTCGAGTAACGACAATGCCATTACGGATGTAGTGATTTTCTCGGCTGGTAT 1009
Query 725 CGGTATCTCGTTGAA---TGGCGCGAATATGATCACAGGCGTGCATTGCTACAATAAAGC 781
||||||||| ||||| ||| || |||||| | || || ||||||||||||||||||||
Sbjct 1010 CGGTATCTCTTTGAATGGTGGTGCAAATATGGTTACGGGTGTGCATTGCTACAATAAAGC 1069
Query 782 TACATGGTTTGGTGGAATCGGCATTCTAGTGAAATCACATTTAACAAGGATAGACAATTG 841
||||||||||||||| || |||||||||||||||||||||||||| |||||||| |||||
Sbjct 1070 TACATGGTTTGGTGGCATTGGCATTCTAGTGAAATCACATTTAACGAGGATAGATAATTG 1129
Query 842 TTACCTTGATTACACAGGTATAGTCATTGAAGATCCTGTTCACGTTCATGTCACAAATTC 901
||||||||||||||||||||||||||| ||||| ||||| || ||||||||||| ||| |
Sbjct 1130 TTACCTTGATTACACAGGTATAGTCATAGAAGACCCTGTCCATGTTCATGTCACCAATGC 1189
Query 902 TCTGTTCTTAGGAGATGCTAACATCGTCTTGAGATCAGTACACGGGAAGATTTCCGGGT- 960
| |||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||
Sbjct 1190 TTTGTTCTTAGGAGATGCAAACATCGTCTTGAGATCGGTACACGGGAAGATTTCC-GGTG 1248
Query 961 TAAACATCGTCAATAGCATGTTTAGCGGTACTGCCAAATTCAACTTCCCGATCGTCAAAC 1020
||||||||||||| | ||||||||||||||| |||||| |||||||||||| ||||| |
Sbjct 1249 TAAACATCGTCAACAACATGTTTAGCGGTACCGCCAAAAACAACTTCCCGATTGTCAAGC 1308
Query 1021 TGA-AAGGAGAGTTTCATGATATCGATCAAGTTGTGGTTGATCACAACAATGCATCAGAG 1079
| | ||||||||||||||||||| ||||||||||| ||||||| ||||||||| || |
Sbjct 1309 T-AGAAGGAGAGTTTCATGATATTAATCAAGTTGTGATTGATCAAAACAATGCAGAAGGG 1367
Query 1080 ATGATGTTAAAATCAACAACCGGAATGTCAAAGGTTTACGCAAACGGGACGA-GATGGGT 1138
|||||| | |||||||||||||||| | | | ||||| |||||| || || | ||||| |
Sbjct 1368 ATGATGCTGAAATCAACAACCGGAAAGGCCATGGTTTCCGCAAATGGAAC-ACGATGGAT 1426
Query 1139 CGCTGATTTTTCCCGTGTCTTGGTATTCCCAAACCGGATAAACCATTACCAGCATTCGTT 1198
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1427 CGCTGATTTTTCCCCTGTTTTGGTATTCCCTAACCGGATAAACCATTACCAGCATTCGTT 1486
Query 1199 TTTCGCTCAATCTGGACAGATTCCTGCAAATGCAGTGACCAAAGTCTCCAACAATGTGGT 1258
|||||||||||| |||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1487 TTTCGCTCAATCCGGACAGATCCCTGCAAATGCAGTGACCAATGTCTCCAACAATATGGT 1546
Query 1259 CGTTGTAGCAACCAATAGA 1277
||||||| |||| |||||
Sbjct 1547 GGTTGTAGAAACCGATAGA 1565
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63955494330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5