BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946167

Length=605
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G17785.1 | Symbols:  | zinc-binding protein-related | chr2:7...   717    0.0  


> AT2G17785.1 | Symbols:  | zinc-binding protein-related | chr2:7728186-7728927 
REVERSE LENGTH=579
Length=579

 Score =  717 bits (388),  Expect = 0.0
 Identities = 520/581 (90%), Gaps = 19/581 (3%)
 Strand=Plus/Plus

Query  21   ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGAGTTTGATGGATACT-GCAA  79
            ||||||||||||||||||||||||||||||||||||||||| || |||||| |||  |||
Sbjct  1    ATGAGTAAACCGAGATGGTTTCAAGTATTGACAGAGGAAGACTTAGATGGAAACTACCAA  60

Query  80   AAGGCATAGTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGTGACGTAGTGTG  139
            || ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  61   AA-GCATACTTGTGGTTTCCGAAAAAACATCTTCAGGTTCGAGTCCTGCGACGTAGTGTG  119

Query  140  CCTCGAGGGCATAGATTCGTATCATATTCAACCTCATGTTCAAGTGGT-CACCTTGTTTG  198
            || ||||||||||||| |  | ||||||||||||||||||||||| || |||| || |||
Sbjct  120  CCCCGAGGGCATAGATCCCAACCATATTCAACCTCATGTTCAAGT-GTGCACCATGCTTG  178

Query  199  ATCTTAACGCCATTGCGCTGGACCAAATCTCTGATTTCTTTGATTGTTTCCAAATTCAAA  258
            ||||||||||| |||  ||| |||||||||||||| |||||||||||| |||||||||||
Sbjct  179  ATCTTAACGCCTTTGAACTGAACCAAATCTCTGATCTCTTTGATTGTTCCCAAATTCAAA  238

Query  259  AT-A-----A---TGGAGGGAAGGAGTATATAGCGTTGAGGCCATGGAGAGACTGTGTAA  309
            || |     |   |||||||||| ||| ||||  ||||||||||||||||||||||||||
Sbjct  239  ATCATGGTTACGTTGGAGGGAAGCAGTTTATAATGTTGAGGCCATGGAGAGACTGTGTAA  298

Query  310  GAACTACAGAAGGTTGCACTAAGCATGTCCGTGGGATTAATTCCAAGTTCTGCTCTTTCA  369
            ||| |||||||||||||||||| |||||||  ||||||||||||||||||||| ||||||
Sbjct  299  GAAATACAGAAGGTTGCACTAAACATGTCCAAGGGATTAATTCCAAGTTCTGCACTTTCA  358

Query  370  CATGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCTAGCATTACTAGACTTT  429
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  359  CCTGCAAGATCGAACATGTTTTGGAGCATGAAGGTGATTTGTCCAGCATTACTAGACTTT  418

Query  430  GGTCG--G-AGGATGATTCGAGAGAAATATCAGAACATGTTGGTGATTTATCAATCCATC  486
            |||||  | ||||||||||||||||| | |||||||| |||||||||||| |||||||||
Sbjct  419  GGTCGTCGGAGGATGATTCGAGAGAACTGTCAGAACACGTTGGTGATTTAGCAATCCATC  478

Query  487  CTTGTGGTGATCCAGAGAGAATCTTTCCACTCAAGAAGAGGTCTCGAAGAAGAAGAGACT  546
            ||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct  479  CTTGTGGTGATCCAGAGAGAATCTTTCCATTAAAGAAGAGGTCTCGAAGAAGAAGAGAGT  538

Query  547  TTTATGACAGCGAC---GAAGACATTTATGGATCTTACTAG  584
            ||| ||||||| ||   |||||||| |||| ||| ||||||
Sbjct  539  TTTTTGACAGCTACTACGAAGACATCTATGCATCATACTAG  579



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29135805260


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5