BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946177
Length=1328
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19940.1 | Symbols: | F-box and associated interaction doma... 636 0.0
> AT4G19940.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:10806195-10807532 FORWARD LENGTH=1338
Length=1338
Score = 636 bits (344), Expect = 0.0
Identities = 836/1063 (79%), Gaps = 75/1063 (7%)
Strand=Plus/Plus
Query 95 aagaa-gaaga--agacaaagagaCATATGCAAGAGCCACGAACCGGTGCCGGAGATTCC 151
||||| ||||| |||| ||||||| | |||||||||| | ||||| | |||||||| ||
Sbjct 48 AAGAACGAAGAGGAGACGAAGAGACTTGTGCAAGAGCCGCCAACCGATACCGGAGATACC 107
Query 152 TTTTGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 211
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 TTTCGATCTCGTGATAGAGATTCTCACGAGACTGCCTGCTAAATCCCTTATGAGGTTCAA 167
Query 212 ATCCGTCTCAAAGCTCTGGTCACT-TTTGATTTGTTC-CAG-AACTTTCACCAACCTTTT 268
|||||||||||||||||||||| | ||||||||||| | | |||||| ||||||| |
Sbjct 168 ATCCGTCTCAAAGCTCTGGTCA-TCCTTGATTTGTTCGC-GAAACTTT-ACCAACCGCCT 224
Query 269 CCAAAAAGTTTCATCATCACCACCGCGTCTATACATGTGGTTG-G-ACGT-AGACAACAG 325
| |||| | || || ||||||||| ||| ||||| ||| | | | ||||||||
Sbjct 225 GC-TAAAG-CT-GTCCTCCCCACCGCGTTTATTTATGTGTTTGAGCTCCTCCGACAACAG 281
Query 326 GAATGT-ATTACTGT-C-A--A-CGTCGTCTTCTCCTGATGACTCGG-----AC-GTGTC 373
| | | ||||| | | | | | |||||||||| |||||||| || ||||
Sbjct 282 CCACCTCAAAACTGTACTACTATCATTGTCTTCTCCTCCTGACTCGGACATTACAATGTC 341
Query 374 TTCCTTTGTAATTGACCAAGAATTGACCATCCCACCGAAT-AAAGGCTACTACCTCTCTC 432
|||| ||||||||| ||||| |||||||| || | || ||||||||| | ||||||
Sbjct 342 TTCCAGTGTAATTGATCAAGATTTGACCATGCC-GGGTATGAAAGGCTACCAGATCTCTC 400
Query 433 ACGTTTTTGGTGGCTTAATGTGTTTCGTAAATGAGTCAAG-GGCAAAGATATACAACACT 491
|||||||| | ||||| ||||| || ||||| | ||||| | | || |||||||| ||
Sbjct 401 ACGTTTTTCGCGGCTTGATGTGCTTGGTAAAAAAATCAAGTGCCCAA-ATATACAATACC 459
Query 492 ACCACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCAATATGATAGCTGAAGAC 551
|| |||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 460 ACGACTAGACAACTTGTTGTCTTACCTGACATAGAAGAATCCACCATCTTAGCTGAAGAA 519
Query 552 CACAAGTA-TAAGAAGATCATGTACCATATCGGACACGATCCCGTTCATGATCAATATAA 610
|||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 520 CACAAG-AGTAAGAAGATCATGTACCATATCGGACACGATCCCGTTTATGATCAATATAA 578
Query 611 AGTGGTTTGCATTGTTTCAAGACCCAGCGACGAA-TATGGAGAGCACTCGTACCTGTCAG 669
|||||||||||| ||||| ||| | || |||||| | || |||| || ||| ||||||||
Sbjct 579 AGTGGTTTGCATAGTTTCTAGAGCTAGTGACGAAGT-TGAAGAGTACACGTTCCTGTCAG 637
Query 670 AGCATTGGATCTTGCTACTAGGAGGAGATAGATCTAA-TCGATGGAGAAAGAT-TCCAAG 727
|||||||| |||||||||||| |||||| |||| | | |||||||||| || || | |
Sbjct 638 AGCATTGGGTCTTGCTACTAGAAGGAGAGGGATC-ACGTAGATGGAGAAAAATATC-ATG 695
Query 728 CCG-T-TGCCAACCACATGTTCCTGTAACACAAGTATTGAATATCAGTGGGCGTATGCAT 785
| | | ||| |||||||||||| || ||||| ||||| | ||||||| |||||||||
Sbjct 696 CAAATAT-CCA-CCACATGTTCCTTTAGGACAAGGATTGACTCTCAGTGGTCGTATGCAT 753
Query 786 TACCTCGCTTGGGTAG-GAT-T-TCTT-TATTC-TGTGCTTGTCAGTTTCGATATTAATT 840
|||||||||||||| | | | | || || | ||||||||| | |||||||| | |||
Sbjct 754 TACCTCGCTTGGGT-GCG-TGTGTCGGATAACCGTGTGCTTGTGATTTTCGATACTCATT 811
Query 841 CTGAAGAAATCAGTATTCTTGAACTACCTAAAGAAAACGAtttttttCCTAAGATGACTG 900
|||||||| | ||||| || || ||||| ||| | | |||| || || | ||
Sbjct 812 CTGAAGAATTTAGTATGCTCCAAGTACCTGGAGATATC--TTTTGGA---AATATAA-TG 865
Query 901 ATCTTATTGAATACGGTAG-AAGAGTAGCTCTTTTACACCATATTGATCTTAAAAG-GCA 958
|||| | ||||||||| | || | ||||| ||||| || ||| | || | | | |
Sbjct 866 GTCTTCTAGAATACGGTGGGAAAA-TAGCTATTTTAAACTATACCAAAGTTGATATCG-A 923
Query 959 AGGTGTGTTG-AATCTATGGGTCGTGGAAGATTCAA-AGAAGAATATGTGGT-CGAGTAA 1015
||||||| || || |||||||| ||||||||| || |||||||| | ||| | |||||
Sbjct 924 AGGTGTGATGGAA-CTATGGGTTGTGGAAGATG-AAGAGAAGAATCTTTGGAGC-AGTAA 980
Query 1016 GACT-TTGGTGTTGCA-TCCTTCT-CAAATGCATCTAGTCAATAGCATCG---GTTTGAA 1069
|| | |||||| | || ||||| | ||| |||| | ||||||||||| ||||||
Sbjct 981 GA-TATTGGTGGT-CAATCCTT-TGCAACTGCAGATGGTCAATAGCATTATTAGTTTGAC 1037
Query 1070 GGTACAAGGTACAACTAGAAACGGTGAGGTTGTCTTGGTACCT 1112
||||| ||| |||||| ||||||| || ||| |||||||||||
Sbjct 1038 GGTACTAGGAACAACTCGAAACGGCGAAGTTATCTTGGTACCT 1080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65361109590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5