BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946181

Length=286
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19905.1 | Symbols: LCR38 | low-molecular-weight cysteine-ri...  89.8    1e-17


> AT4G19905.1 | Symbols: LCR38 | low-molecular-weight cysteine-rich 
38 | chr4:10794165-10794758 REVERSE LENGTH=231
Length=231

 Score = 89.8 bits (48),  Expect = 1e-17
 Identities = 67/76 (88%), Gaps = 2/76 (3%)
 Strand=Plus/Plus

Query  23  ATGGCCAAACTACTCTTTTCGTATCTATTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  82
           ||||| |||||||| | ||| ||||| |||||||||||||||||||||||||||||||||
Sbjct  1   ATGGCAAAACTACTGTGTTCTTATCTGTTCATCTGCATGTTTGTTCTCTCAGGCTTTTTG  60

Query  83  GC-TTCTTCGAGTGCA  97
           |  || ||| ||||||
Sbjct  61  GTATT-TTCAAGTGCA  75



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13170150238


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5