BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946190
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19865.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1522 0.0
AT4G19870.1 | Symbols: | Galactose oxidase/kelch repeat superf... 363 3e-99
> AT4G19865.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10780956-10782365 REVERSE LENGTH=1410
Length=1410
Score = 1522 bits (824), Expect = 0.0
Identities = 1101/1229 (90%), Gaps = 42/1229 (3%)
Strand=Plus/Plus
Query 21 ATGAACCTCCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAATTCGTCTCCACCACAA 80
|||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGAACTTTCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAACTCGTCTCCACCACAT 60
Query 81 TCACCTCCATCGTCGTCGTCATCTCCGTCGCTTTCTTCT-CTCCCTGACGAAATCTTCGT 139
|||||||| ||||||||||||||||||||||||| || || || || |||||| ||||
Sbjct 61 TCACCTCC---GTCGTCGTCATCTCCGTCGCTTTCT-CTACTTCCAGAAGAAATCGTCGT 116
Query 140 GAACTGCTTAGCTCGGATCTCGAGGTCATACTACCCAACACTCTCACTCGTTTCGAAAAG 199
| ||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||
Sbjct 117 GCACTGCTTAGCTCGGATCTCAAGATTGTACTACCCAACGCTCTCACTCGTTTCGAAAAG 176
Query 200 CTTCCGTTCAATTCTCTCTTCCACCGAGCTCTTCGCAGCCAGATCTCACATCGGAAGCAC 259
|||||| ||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||
Sbjct 177 CTTCCGCTCAATTCTCTCTTCCACGGAGCTCTACGCAACCAGATCTCACCTCGGAAGCAC 236
Query 260 TGAACAGTGTGTCTATGTCTGTCTATGGGATCGCAGTTATCAATTTCCCCAATGGCTTAG 319
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 237 TGAACAGTGTGTCTATCTCTGTCTATGGGATCCCAGTTATCAATTTCCCCAATGGCTTAG 296
Query 320 ACTATGGGTTAACCCTAATCGAACCCTAGCCAACTCCATGATTaagaagagaaggaagaa 379
||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 297 ACTCTTAGTTAACCCTAACCGAACCCTAGCCAACTCCATCATTAAGAAGAGAAGGAAGAA 356
Query 380 gaagaagaagaCAACTGGACCAATGTTAGTTCCGATTACCTCGTCTAATTTTACATCTGT 439
|||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||| ||
Sbjct 357 GAAGAAGA---CAACTGGACAAATGTTAGTTCCGCTTACCTCGTCTAAGTTTACATCAGT 413
Query 440 ATCAAAAGCCACCGTTGTTGTTGGTTCAGAAATTTATGTAATTGGCGGCCCAGTCGACTC 499
|||||||||||||||||| |||||||| || ||||||||| ||||||| |||||||||||
Sbjct 414 ATCAAAAGCCACCGTTGTAGTTGGTTCTGAGATTTATGTACTTGGCGGTCCAGTCGACTC 473
Query 500 TGAACCATCCTCCACCGTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 559
| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 CG--CC----------GTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 521
Query 560 GAGCATGACTATAGTCC-GAATGAATGCGTTGGCATGTTTCCACGATGGGAAAATATATG 618
|||||||| | || ||| |||||||||| | |||||||||||||||||||||||| || |
Sbjct 522 GAGCATGAATGTA-TCCCGAATGAATGCCTGGGCATGTTTCCACGATGGGAAAATTTACG 580
Query 619 TAATGGGAGGGTGCCAAGGATTAGAGGACGAACCATGGGCTGAGGTGTTCGATACAAAGA 678
|||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 581 TAATGGGAGGTTGCCAAGGATTAAAGGACGAACCATGGGCTGAGGTGTTCAATACAAAGA 640
Query 679 CTAAGACTTGGCAACACCTTCCTGAGCCGGATACTGAGGTACGTAAGTGTTCCATTTACA 738
|| |||||||| || ||| |||||||||| || |||||||||||||||||||||| |||
Sbjct 641 CTCAGACTTGGGAAGGCCTCCCTGAGCCGGGTAGTGAGGTACGTAAGTGTTCCATTGACA 700
Query 739 GTATTGCAGAGATTGAAG-AAACGATTCAGTTTGGGAATGTAAACGAGACGTATGCTTAC 797
| | | || |||||||| ||| |||| ||||||| ||||||||||||| || |||||||
Sbjct 701 GAAGCGGAGTGATTGAAGGAAA-GATTGAGTTTGGAAATGTAAACGAGATGTGTGCTTAC 759
Query 798 CACACGAAGCAATGTAAATGGGAA-AGCCGTGTAAAACAAAAGT-----T--GAAGTCAG 849
||||||||| |||||||||||| | ||||||| ||||||| | || |||||
Sbjct 760 GACACGAAGCTATGTAAATGGGAGTATT-GTGTAAA-CAAAAGTGCAGCTTTGAGGTCAG 817
Query 850 AATGTATGATTGAGAATGTTTCATATGGCTAT-TGGAATATGCGCTTGTTGTGGTATGAC 908
|||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||
Sbjct 818 AATGTATGATTGAGAATGTTTCATATGGCT-TCTGGAACATGCGCTTGTTGTGGTATGAC 876
Query 909 AATGACTTACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGACTCACTAGATGAGATG 968
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | |
Sbjct 877 AATGACATACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGAGTCACTAGATGATAAG 936
Query 969 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTTAGC-TGTGGTGGGAA 1027
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 937 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTT-GCATGTGGTGGGAA 995
Query 1028 ACTCTTACTTTTATGGGAAGGGTATATGAAGCATAATCCCAATAATAGGAAGAAGATTTG 1087
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 996 ACTCTTACTTTTATGGGAAGGATATATGAAGCATAACCCCAATAATAGGAAGAAGATTTG 1055
Query 1088 GTGCGCTGAAATCGCTATAGAAAAGCGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1147
||| || | ||||| ||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1056 GTGTGCGGTGATCGCGATAGAGAAGTGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1115
Query 1148 GGTTGAGGTTTTGCATAAC-GTCCCTATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1206
||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1116 TGTTGATGTTTTGTATA-CTGTCCCCATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1174
Query 1207 CGGTTTGATTGACTTGTAT-CAAGGTATG 1234
||||||||||||||||||| || ||||||
Sbjct 1175 CGGTTTGATTGACTTGTATTCA-GGTATG 1202
> AT4G19870.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr4:10782871-10784256 REVERSE LENGTH=1386
Length=1386
Score = 363 bits (196), Expect = 3e-99
Identities = 259/288 (90%), Gaps = 10/288 (3%)
Strand=Plus/Plus
Query 943 AAGGGTTAGACTCACTAGAT-GAGATGTACATGAGGAATGGTGGCTCAAGTGGTAATACG 1001
||||||| || |||||| | ||||| ||| |||||||||||||||||||| |||||||
Sbjct 932 AAGGGTTGGAGTCACTA-TTAGAGATACACAAGAGGAATGGTGGCTCAAGTGATAATACG 990
Query 1002 ACTAAACTAGTTAG-CTGTGGTGGGAAACTCTTACTTTTATGGGAAGGGTATATGAAGCA 1060
|||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 991 ACTAAACTAGTT-GCCTGTGGTGGGAAACTCTTACTTTTATGGGAAGGGTACATGAAGCA 1049
Query 1061 TAATCCCAATAATAGGAAGAAGATTTGGTGCGCTGAAATCGC-TATAGAAAAGCGTGATG 1119
||||||||||||||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 1050 TAATCCCAATAATAGGAAGAAGATTTGGTGCGCGGTTATCGCGT-TAGAAAAGCGTGATG 1108
Query 1120 GAGGTGGAG-TTTGGGGAATTGTTGAGAGGGTTGAGGTTTTGCATAACGTCCCTATATCA 1178
||||| || ||||||||||||||||| ||||||| ||| |||||| |||||| | ||||
Sbjct 1109 GAGGTA-AGGTTTGGGGAATTGTTGAGTGGGTTGATGTTGTGCATATCGTCCCCACATCA 1167
Query 1179 TGTCA-GCTCTTGCATTGTCTCGTTGTCTCGGTTTGATTGACTTGTAT 1225
|| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1168 TG-CAAGCTCTTGCATTGTCTCGTTGTCTCGGTTTGATTAACTTGTAT 1214
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60642258360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5