BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946190 Length=1234 Score E Sequences producing significant alignments: (Bits) Value AT4G19865.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1522 0.0 AT4G19870.1 | Symbols: | Galactose oxidase/kelch repeat superf... 363 3e-99 > AT4G19865.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:10780956-10782365 REVERSE LENGTH=1410 Length=1410 Score = 1522 bits (824), Expect = 0.0 Identities = 1101/1229 (90%), Gaps = 42/1229 (3%) Strand=Plus/Plus Query 21 ATGAACCTCCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAATTCGTCTCCACCACAA 80 |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ATGAACTTTCAAGTGGAACCACCGGAGAAGAAGAAGACTAAGAACTCGTCTCCACCACAT 60 Query 81 TCACCTCCATCGTCGTCGTCATCTCCGTCGCTTTCTTCT-CTCCCTGACGAAATCTTCGT 139 |||||||| ||||||||||||||||||||||||| || || || || |||||| |||| Sbjct 61 TCACCTCC---GTCGTCGTCATCTCCGTCGCTTTCT-CTACTTCCAGAAGAAATCGTCGT 116 Query 140 GAACTGCTTAGCTCGGATCTCGAGGTCATACTACCCAACACTCTCACTCGTTTCGAAAAG 199 | ||||||||||||||||||| || | ||||||||||| |||||||||||||||||||| Sbjct 117 GCACTGCTTAGCTCGGATCTCAAGATTGTACTACCCAACGCTCTCACTCGTTTCGAAAAG 176 Query 200 CTTCCGTTCAATTCTCTCTTCCACCGAGCTCTTCGCAGCCAGATCTCACATCGGAAGCAC 259 |||||| ||||||||||||||||| ||||||| |||| ||||||||||| |||||||||| Sbjct 177 CTTCCGCTCAATTCTCTCTTCCACGGAGCTCTACGCAACCAGATCTCACCTCGGAAGCAC 236 Query 260 TGAACAGTGTGTCTATGTCTGTCTATGGGATCGCAGTTATCAATTTCCCCAATGGCTTAG 319 |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 237 TGAACAGTGTGTCTATCTCTGTCTATGGGATCCCAGTTATCAATTTCCCCAATGGCTTAG 296 Query 320 ACTATGGGTTAACCCTAATCGAACCCTAGCCAACTCCATGATTaagaagagaaggaagaa 379 ||| | ||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 297 ACTCTTAGTTAACCCTAACCGAACCCTAGCCAACTCCATCATTAAGAAGAGAAGGAAGAA 356 Query 380 gaagaagaagaCAACTGGACCAATGTTAGTTCCGATTACCTCGTCTAATTTTACATCTGT 439 |||||||| ||||||||| ||||||||||||| ||||||||||||| |||||||| || Sbjct 357 GAAGAAGA---CAACTGGACAAATGTTAGTTCCGCTTACCTCGTCTAAGTTTACATCAGT 413 Query 440 ATCAAAAGCCACCGTTGTTGTTGGTTCAGAAATTTATGTAATTGGCGGCCCAGTCGACTC 499 |||||||||||||||||| |||||||| || ||||||||| ||||||| ||||||||||| Sbjct 414 ATCAAAAGCCACCGTTGTAGTTGGTTCTGAGATTTATGTACTTGGCGGTCCAGTCGACTC 473 Query 500 TGAACCATCCTCCACCGTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 559 | || |||||||||||||||||||||||||||||||||||||||||||| Sbjct 474 CG--CC----------GTGCGGGTGCTTGATTGTTGCAGTCACACTTGGCGCGATGCACC 521 Query 560 GAGCATGACTATAGTCC-GAATGAATGCGTTGGCATGTTTCCACGATGGGAAAATATATG 618 |||||||| | || ||| |||||||||| | |||||||||||||||||||||||| || | Sbjct 522 GAGCATGAATGTA-TCCCGAATGAATGCCTGGGCATGTTTCCACGATGGGAAAATTTACG 580 Query 619 TAATGGGAGGGTGCCAAGGATTAGAGGACGAACCATGGGCTGAGGTGTTCGATACAAAGA 678 |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 581 TAATGGGAGGTTGCCAAGGATTAAAGGACGAACCATGGGCTGAGGTGTTCAATACAAAGA 640 Query 679 CTAAGACTTGGCAACACCTTCCTGAGCCGGATACTGAGGTACGTAAGTGTTCCATTTACA 738 || |||||||| || ||| |||||||||| || |||||||||||||||||||||| ||| Sbjct 641 CTCAGACTTGGGAAGGCCTCCCTGAGCCGGGTAGTGAGGTACGTAAGTGTTCCATTGACA 700 Query 739 GTATTGCAGAGATTGAAG-AAACGATTCAGTTTGGGAATGTAAACGAGACGTATGCTTAC 797 | | | || |||||||| ||| |||| ||||||| ||||||||||||| || ||||||| Sbjct 701 GAAGCGGAGTGATTGAAGGAAA-GATTGAGTTTGGAAATGTAAACGAGATGTGTGCTTAC 759 Query 798 CACACGAAGCAATGTAAATGGGAA-AGCCGTGTAAAACAAAAGT-----T--GAAGTCAG 849 ||||||||| |||||||||||| | ||||||| ||||||| | || ||||| Sbjct 760 GACACGAAGCTATGTAAATGGGAGTATT-GTGTAAA-CAAAAGTGCAGCTTTGAGGTCAG 817 Query 850 AATGTATGATTGAGAATGTTTCATATGGCTAT-TGGAATATGCGCTTGTTGTGGTATGAC 908 |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| Sbjct 818 AATGTATGATTGAGAATGTTTCATATGGCT-TCTGGAACATGCGCTTGTTGTGGTATGAC 876 Query 909 AATGACTTACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGACTCACTAGATGAGATG 968 |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | | Sbjct 877 AATGACATACAAAAGGATTATTGGAAAAGATTGGAAGGGTTAGAGTCACTAGATGATAAG 936 Query 969 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTTAGC-TGTGGTGGGAA 1027 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 937 TACATGAGGAATGGTGGCTCAAGTGGTAATACGACTAAACTAGTT-GCATGTGGTGGGAA 995 Query 1028 ACTCTTACTTTTATGGGAAGGGTATATGAAGCATAATCCCAATAATAGGAAGAAGATTTG 1087 ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 996 ACTCTTACTTTTATGGGAAGGATATATGAAGCATAACCCCAATAATAGGAAGAAGATTTG 1055 Query 1088 GTGCGCTGAAATCGCTATAGAAAAGCGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1147 ||| || | ||||| ||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 1056 GTGTGCGGTGATCGCGATAGAGAAGTGTGATGGAGGTGGAGTTTGGGGAATTGTTGAGAG 1115 Query 1148 GGTTGAGGTTTTGCATAAC-GTCCCTATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1206 ||||| |||||| ||| | ||||| |||||||||||||||||||||||||||||||||| Sbjct 1116 TGTTGATGTTTTGTATA-CTGTCCCCATATCATGTCAGCTCTTGCATTGTCTCGTTGTCT 1174 Query 1207 CGGTTTGATTGACTTGTAT-CAAGGTATG 1234 ||||||||||||||||||| || |||||| Sbjct 1175 CGGTTTGATTGACTTGTATTCA-GGTATG 1202 > AT4G19870.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr4:10782871-10784256 REVERSE LENGTH=1386 Length=1386 Score = 363 bits (196), Expect = 3e-99 Identities = 259/288 (90%), Gaps = 10/288 (3%) Strand=Plus/Plus Query 943 AAGGGTTAGACTCACTAGAT-GAGATGTACATGAGGAATGGTGGCTCAAGTGGTAATACG 1001 ||||||| || |||||| | ||||| ||| |||||||||||||||||||| ||||||| Sbjct 932 AAGGGTTGGAGTCACTA-TTAGAGATACACAAGAGGAATGGTGGCTCAAGTGATAATACG 990 Query 1002 ACTAAACTAGTTAG-CTGTGGTGGGAAACTCTTACTTTTATGGGAAGGGTATATGAAGCA 1060 |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||| Sbjct 991 ACTAAACTAGTT-GCCTGTGGTGGGAAACTCTTACTTTTATGGGAAGGGTACATGAAGCA 1049 Query 1061 TAATCCCAATAATAGGAAGAAGATTTGGTGCGCTGAAATCGC-TATAGAAAAGCGTGATG 1119 ||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||| Sbjct 1050 TAATCCCAATAATAGGAAGAAGATTTGGTGCGCGGTTATCGCGT-TAGAAAAGCGTGATG 1108 Query 1120 GAGGTGGAG-TTTGGGGAATTGTTGAGAGGGTTGAGGTTTTGCATAACGTCCCTATATCA 1178 ||||| || ||||||||||||||||| ||||||| ||| |||||| |||||| | |||| Sbjct 1109 GAGGTA-AGGTTTGGGGAATTGTTGAGTGGGTTGATGTTGTGCATATCGTCCCCACATCA 1167 Query 1179 TGTCA-GCTCTTGCATTGTCTCGTTGTCTCGGTTTGATTGACTTGTAT 1225 || || ||||||||||||||||||||||||||||||||| |||||||| Sbjct 1168 TG-CAAGCTCTTGCATTGTCTCGTTGTCTCGGTTTGATTAACTTGTAT 1214 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60642258360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5