BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946201

Length=441
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19720.1 | Symbols:  | Glycosyl hydrolase family protein wit...   412    1e-114


> AT4G19720.1 | Symbols:  | Glycosyl hydrolase family protein with 
chitinase insertion domain | chr4:10730363-10731750 REVERSE 
LENGTH=1147
Length=1147

 Score =  412 bits (223),  Expect = 1e-114
 Identities = 345/400 (86%), Gaps = 23/400 (6%)
 Strand=Plus/Plus

Query  33   AATGGCGAGAAGCGATTGAGGATGACGCTGAACGTATTGAAAGAATGCCTTTGCTATTGA  92
            |||||||||||||||||||||| || |||||||| |  ||||||||||||||||||||||
Sbjct  492  AATGGCGAGAAGCGATTGAGGACGATGCTGAACGCACCGAAAGAATGCCTTTGCTATTGA  551

Query  93   CGGCT---G------------CGGTTTACGATTTTGTTTCCTACCCAATTCCAGAGATTG  137
            |||||   |            |||||||||||| |||||||||||||||||  |||||| 
Sbjct  552  CGGCTGCGGTTTACTACTCTCCGGTTTACGATTCTGTTTCCTACCCAATTCGGGAGATTA  611

Query  138  AAGAAAACTTGGATTGGGTTAACCTAATTGCCTATGATTTCTACTGTTCATCCAC-ACTC  196
            || |||| ||||||||||||||||| ||||||||||||||||||| ||||||||| || |
Sbjct  612  AAAAAAAATTGGATTGGGTTAACCTTATTGCCTATGATTTCTACTCTTCATCCACAAC-C  670

Query  197  ATTGTTCTACCCGCGGCTCTGTTTGATCCTTCAAACCCGAAAGGTCCATGCAGAGACTCC  256
            |||| || |||||| |||||||||||||| ||||||||||||||||||||  | ||||  
Sbjct  671  ATTGGTCCACCCGCCGCTCTGTTTGATCCCTCAAACCCGAAAGGTCCATGTGGGGACTAT  730

Query  257  GGTTTGAAAGAGTGGATTAAGGCCGGACTTTCAGCGAAGAAAGCAGTCTTGGGATT-CCT  315
            |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || 
Sbjct  731  GGTTTGAAAGAGTGGATTAAGGCCGGACTTCCGGCGAAGAAAGCAGTCTTGGGATTTCC-  789

Query  316  ATACGTTGGAGGGACCTGGAGTTTAG-AAGGCGGTAATGATGCGGCCACCACCCCAGTA-  373
            |||||||||| ||||||||||| ||| ||| ||| |||||||||||||||| || |||| 
Sbjct  790  ATACGTTGGATGGACCTGGAGTCTAGGAAG-CGGCAATGATGCGGCCACCAGCCGAGTAG  848

Query  374  CATACATCAGCTGATGGTTCTATCAACTATAATCAGATAA  413
            | |||||||||||| ||||||||||||||  |||||||||
Sbjct  849  C-TACATCAGCTGAGGGTTCTATCAACTACGATCAGATAA  887



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20961651333


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5