BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946204
Length=955
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19700.1 | Symbols: RING | SBP (S-ribonuclease binding prote... 1496 0.0
AT5G45100.1 | Symbols: | SBP (S-ribonuclease binding protein) ... 294 9e-79
AT2G12290.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 233 2e-60
> AT4G19700.1 | Symbols: RING | SBP (S-ribonuclease binding protein)
family protein | chr4:10713561-10714707 REVERSE LENGTH=1059
Length=1059
Score = 1496 bits (810), Expect = 0.0
Identities = 910/958 (95%), Gaps = 8/958 (1%)
Strand=Plus/Plus
Query 2 GGAGCTTTTTACAACAACAATGGCTGTTCAAGCTCATCACATGAACATTTTCTCTCAGCT 61
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 54 GGAGCTTTTTTCAACAACAATGGCTGTTCAAGCTCATCACATGAACATTTTCTCTCAGTT 113
Query 62 AATATCATCAAACAGAGATTGTGTTAAATTTCAAGAAAACATGAATCACGGCGAGTTTGA 121
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 114 TATATCACCAAACAGAGATTGTGTTAAATTTCAAGAAAACATGAACCACGGCGAGTTTGA 173
Query 122 -TATTACCGGCGGTGAAGTTCCGTTAATAACTGGAGAATCTTTCGCCGTCGACCCTTTAG 180
| |||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 174 GT-TTACCGGCGGTGAAGTTCCGTTAATAACCGGAGAATCTTTCGCCGTTGAGCCTTTAG 232
Query 181 CTGCGAAAGCCAACTTCAACAAATCAGAAAGTGGTCTCAGTTACAACTTCACTGTTCCTC 240
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 233 CTGCGAAAGCCAACTTCAACAAAGCAGAAAGTGGTCTCAGTTACAATTTCACTGTTCCTC 292
Query 241 CTCCATCTACAAAACGCCCGCGAGAGTTTCAATTC-CGTGACTCAAACGCTCCGGTTAAA 299
||| ||||||||||||| |||||| ||||||||| | |||||||||||||||||||||
Sbjct 293 CTCTGTCTACAAAACGCCAGCGAGATTTTCAATTCTC-AGACTCAAACGCTCCGGTTAAA 351
Query 300 CGGAGGTCCGTCGCGTTTGACTCACCACCACCGTCGTTGATAAACGCTGAACTCGTCTCT 359
||||||||||| |||||||||||| || |||||||||||||||||| ||||||||| |||
Sbjct 352 CGGAGGTCCGTAGCGTTTGACTCATCATCACCGTCGTTGATAAACGTTGAACTCGTATCT 411
Query 360 CAGATTCAAAACCAACAACAATCAGAGATTGATAGGTTCGTAGCTCAGCAAACAGAGAAG 419
|||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 412 CAGATTCAAAACCAACAACAGTCAGAGATCGATAGGTTCGTAGCTCAGCAAACGGAGAAG 471
Query 420 CTAAGAATAGAGATTGAAGCAAGGCAACAAACGCAAACGCGGATGTTAGCATCTGCGGTT 479
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 472 CTAAGAATAGAGATTGAAGCAAGGCAACAAACGCAAACGCGGATGTTAGCGTCTGCGGTT 531
Query 480 CAAAACGCTATAGCCAAGAAACTAAAAGAGAAAGACGACGAAATCGTACGGATTAGAAAC 539
||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 532 CAAAACGTTATAGCCAAGAAACTAAAAGAGAAAGACGATGAAATCGTACGGATTCGAAAC 591
Query 540 CTTAACTGGGTTTTACAAGAGCGAGTGAAGAGTCTTTACGTCGAAACTCAGATTTGGCGT 599
|| |||||||||||||||||| | |||||||||||||||||||||| |||||||||||||
Sbjct 592 CTAAACTGGGTTTTACAAGAGAGGGTGAAGAGTCTTTACGTCGAAAATCAGATTTGGCGT 651
Query 600 GATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGAACAAACCTAGACCAAGTT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 GATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGAACAAACCTAGACCAAGTT 711
Query 660 CTTGCTCAAATCGAAACGTTTCCAACCGCTTCAGCCGTTGTAGAAGACGACGTGGAATCG 719
||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 712 CTTGCTCAACTCGAAACGTTTCCAACCGCTTCAGCCGTTGTAGAAGACGATGCGGAATCG 771
Query 720 AGTTGTGGAAGTTGCTGCGGTGATGGTGGTGGTGAAGCGGTTACGGCGGTTAGTGGTGGT 779
|||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 772 AGTTGTGGAAGTTGTTGCGGTGATGGTGGTGGTGAAGCGGTAACGGCGGTTGGTGGTGGT 831
Query 780 TGCAAACGGTGCGGTGAGAGAGAAGCGAGTGTGTTGGTGTTACCATGTCGTCATTTGTGT 839
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGTAAACGGTGCGGTGAGAGAGAAGCGAGTGTGTTGGTGTTACCATGTCGTCATTTGTGT 891
Query 840 TTGTGTACGGTTTGTGGTGGTTCGGCTTTGTTACGGACTTGTCCAGTTTGCGAT-TCGGT 898
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||
Sbjct 892 TTGTGTACGGTTTGTGGTGGTTCGGCTTTGTTACGGACTTGTCCGGTTTGCGATAT-GGT 950
Query 899 CATGAACGCTAGTGTGCATGTTAACATGTCTTCTTGACCAT-TTTCtttttt-ttCGT 954
||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||
Sbjct 951 CATGAACGCTAGTGTGCATGTTAACATGTCTTCTTGACCATCTTTTTTTTTTGTTCGT 1008
> AT5G45100.1 | Symbols: | SBP (S-ribonuclease binding protein)
family protein | chr5:18218699-18219960 FORWARD LENGTH=1174
Length=1174
Score = 294 bits (159), Expect = 9e-79
Identities = 471/613 (77%), Gaps = 56/613 (9%)
Strand=Plus/Plus
Query 360 CAGATTCAAAACCAACAACAATCAGAGATTGATAGGTTCGTAGCTCAGCAAACAGAGAA- 418
||||| ||| | ||| ||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct 383 CAGATCCAACAGCAA-AAC--TCAGAAATCGATAGATTCGTAGCGCAACAAACGGA-AAC 438
Query 419 GCTAAGAATAGAGATT-GAAGCAAGGCAACA-AACGCAAACGCGGATGTTAGCATCTGCG 476
| | ||||| || ||| ||||| || ||| | ||||||||||||||||||||| || |||
Sbjct 439 GTTGAGAATCGA-ATTAGAAGCGAGACAA-AGAACGCAAACGCGGATGTTAGCGTCAGCG 496
Query 477 GTTCAAAACGCTATAGCCAAGAAA-CTAAAAGAGAAAGACGACGAAATCGTACGGAT-TA 534
|| |||||||| ||| || ||| || |||| ||||||||| || || || | ||
Sbjct 497 GTACAAAACGCGATATTGAA-AAAGCTGAAAGCGAAAGACGAAGAGATTATAAGAATGGG 555
Query 535 GAAACCTT-AACTGGGTTTTACAAGAGCGAGTGAAGAGTCTTTACGTCGA-AACTCAGAT 592
|||| || ||||||||||||||||| || ||||||| ||| ||||| || || ||||||
Sbjct 556 GAAA--TTAAACTGGGTTTTACAAGAACGTGTGAAGAATCTCTACGTAGAGAA-TCAGAT 612
Query 593 TTGGCGTGATATCGCTCAAACCAACGAAGCAAAC-GCTAATACTCTTC-GAACAAACCTA 650
||||||||| | || ||||| || ||||| || || |||| || || || |||| ||
Sbjct 613 CTGGCGTGATTTAGCACAAACTAATGAAGC-TACTGCGAATAATC-TCAGATCAAATCTC 670
Query 651 GACCAAGTTCTT-GCTCAAATCGAAACG-TTTCCAACCGCTTC--AG-CCGTT-GTAGAA 704
|| |||||| || |||||| | | | | ||| | || ||| | || || || |||
Sbjct 671 GAACAAGTT-TTGGCTCAAGTTG--ATGATTTAGATGCGTTTCGTCGTCCTTTGGTTGAA 727
Query 705 G-A-C-GACG-TG--GAATCGAGTTGTGGAAGTTGCTG-CGGTGATGGTGGTGGTGAAGC 757
| | | || | || ||||| || |||||||| || || | | || |||| | || || |
Sbjct 728 GAAGCTGATGATGCAGAATCTAGCTGTGGAAGCTG-TGAC-G-GA-GGTGAT-GT-AA-C 780
Query 758 GGTTACGGCGGTTAGTGGTGGTTGCAAACGGTGCGGTGAGAGAGA-AGCGAGTGTGTTGG 816
|| ||| |||| || || || ||||||||||||||| | | |||||||||||||
Sbjct 781 GG---CGGTTGTTAACGGAGGATGTAAACGGTGCGGTGAGTTA-ACGGCGAGTGTGTTGG 836
Query 817 TGTTACCATGTCGTCATTTGTGTTTGTGTACGGTTTGTGG-TGGTTCGGCTTTGTTACGG 875
|||| || |||||||||||||||||||||||||||||||| | || |||||||||| |||
Sbjct 837 TGTTGCCTTGTCGTCATTTGTGTTTGTGTACGGTTTGTGGATCGT-CGGCTTTGTTGCGG 895
Query 876 ACTTGTCCAGTTTGCGAT-TCGGTCATGAAC-GCTAGTGTGCATGTTAACATGTCTTCTT 933
|| ||||| || || ||| | |||||||| | |||||||| |||||||||||||| || |
Sbjct 896 ACGTGTCCTGTATGTGATAT-GGTCATGA-CTGCTAGTGTACATGTTAACATGTCATCAT 953
Query 934 GACCATTTTCttt 946
||||||||| |||
Sbjct 954 GACCATTTT-TTT 965
> AT2G12290.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: SBP (S-ribonuclease binding protein) family protein
(TAIR:AT4G19700.1); Has 66 Blast hits to 66 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink). | chr2:4924100-4924501 REVERSE LENGTH=402
Length=402
Score = 233 bits (126), Expect = 2e-60
Identities = 158/173 (91%), Gaps = 4/173 (2%)
Strand=Plus/Plus
Query 524 CGTACGGATTAGAAACCTTAACTGGGTTTTACAAGAGCGA-GTGAAGAGTCTTTACGTCG 582
|||||||||| ||||||| || ||||||||||||||| | ||||| |||||||||||||
Sbjct 78 CGTACGGATTCGAAACCTAAATTGGGTTTTACAAGAG-AAGGTGAAAAGTCTTTACGTCG 136
Query 583 AA-ACTCAGATTTGGCGTGATATCGCTCAAACCAACGAAGCAAACGCTAATACTCTTCGA 641
|| | |||||||||||||| ||||| |||||| ||| |||||||| ||||||||||||||
Sbjct 137 AATA-TCAGATTTGGCGTGGTATCGATCAAACTAACAAAGCAAACCCTAATACTCTTCGA 195
Query 642 ACAAACCTAGACCAAGTTCTTGCTCAAATCGAAACGTTTCCAACCGCTTCAGC 694
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 196 ACAAACCTAGACCAAGTTCTTGCTCAACTCGAAACGTTTCCAACCGCTTCAGC 248
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46717756710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5