BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946213
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19650.1 | Symbols: | Mitochondrial transcription terminati... 2651 0.0
> AT4G19650.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr4:10691674-10695701 FORWARD
LENGTH=2263
Length=2263
Score = 2651 bits (1435), Expect = 0.0
Identities = 1589/1665 (95%), Gaps = 4/1665 (0%)
Strand=Plus/Plus
Query 33 GTTGCGATGTTATTGTGCAGAGAA-CAGAGAAGAGTTCATAAACTGTTGAATATGATTTC 91
|||||||||||||| | |||| || |||||||||||||||||||||||||||||||||||
Sbjct 88 GTTGCGATGTTATTATCCAGA-AATCAGAGAAGAGTTCATAAACTGTTGAATATGATTTC 146
Query 92 AAATCTCAACAATTGTATAGCTTTCTCACCAATTCCTCGTCAAAACCAAGTTCAAAGATT 151
|||||||||| | |||||| |||||||| | |||||||||||||||| ||||||||||||
Sbjct 147 AAATCTCAACTACTGTATAACTTTCTCATCTATTCCTCGTCAAAACCCAGTTCAAAGATT 206
Query 152 GAAAGCTGTCTTCGTAAGGATAAATCTGAGTTACGACAACACTCGTCTCACTTACCAACT 211
||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 207 GAAAGCTGTGTTCGTCAGGATAAATCTAAGTTACAACAACACTCGTCTCACTTACCAACT 266
Query 212 AGAGCATATAAGTAAGAATTCTCCTTGTTTTATGTCGGCTTTGTTGTCCAAGATTGATGA 271
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 267 AGAGCATATAAGTAAGAATTCTCCTTGTTTTATGTCGACTTTGTTGTCTAAGATTGATGA 326
Query 272 TAATCACAAGGATGTATCCAGGGGATTGACTAAGTTCCTTAGGTACAATCCGATAAACGA 331
|||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 327 TAATCAGAAAGATGTATCCAAGGGATTGACTAAGTTCCTTAGGTACAATCCGATAAACGA 386
Query 332 GTTTGAACCGTTTTTCGAGAGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTTCTTCC 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 GTTTGAACCGTTTTTCGAGAGTTTGGGTTTGTGTCCTTATGAGTTTGAAACGTTTCTTCC 446
Query 392 GCAGAAGCTAATGTTTTTGAGTGATGATGGTATAATGTTTGAGAACTTTCATGCTCTTTG 451
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 447 ACGGAAGCTAATGTTTTTGAGTGATGATGGTATCATGTTTGAGAACTTTCATGCTCTTTG 506
Query 452 CAACTATGGGATCCCGCGTGGCAAGATTGGCCATATGTATAAAGAAGCGAGAGAGATTTT 511
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 507 CAACTATGGGATCCCGCGTGGTAAGATTGGCCGTATGTATAAAGAAGCGAGAGAGATTTT 566
Query 512 TAGATATGAATCTGGGTTGTTGGCGATGAAACTCAGGGATTATGAGAATTTGGGTCTAAG 571
|||||||||||||||| ||||||||||||| || |||| |||||||||||||||||| ||
Sbjct 567 TAGATATGAATCTGGGATGTTGGCGATGAAGCTAAGGGGTTATGAGAATTTGGGTCTTAG 626
Query 572 CAAGGCTACAGTTATCAAGTTAGTTACTAGTTGCCCTTTGCTGCTGGTTGGTGGGATTGA 631
|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 627 TAAGGCTACAGTTATTAAGTTAGTTACTAGTTGCCCTTTGCTACTGGTTGGTGGGATTGA 686
Query 632 TGCTGAATTTTCTTCTGTGGTTGATAAGTTGAAGGGGTTACAAGTAGGATGTGATTGGCT 691
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 687 TGCTGAGTTTTCTTCTGTAGTTGATAAGTTGAAAGGGTTACAAGTAGGATGTGATTGGCT 746
Query 692 CGGGCGGTACTTGTCTGAACGGAAAACATATAGCTGGCGCAGAATTCTGGAGACAATAGA 751
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TGGGCGGTACTTGTCTGACCGGAAAACATATAGCTGGCGCAGAATTCTGGAGACAATAGA 806
Query 752 GTTTCTTGATAAAGTGGGATGTAAAGATGAGAACTTGAGTAGTCTTTTGAAAACGTATCC 811
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 807 GTTTCTTGATAAAGTGGGATGTAAAGAGGAGAAGTTGAGTAGTCTTTTGAAAACGTATCC 866
Query 812 AGCTTTAGTAATCGAAGGCTCCGGTAAGAAATTCTATGTTCTGTTTGGTAGGTTGTTTAA 871
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 867 AGCTTTGGTAATCGAAGGCTCCGGAAAGAAATTCTATGTTCTGTTTGGTAGGTTGTTTAA 926
Query 872 AGTGGGGTTTCAAGTGAATGAGATTTATAGGCTATTTATAGACTACCCAGAGATGTTGTC 931
|| |||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 927 AGCGGGGCTTCAAGTGAATGAGATTTATAGGCTATTTATAGACAATCCAGAGATGTTGTC 986
Query 932 AGACAAATGCGTAAAAAATATCCAAAAGACGTTGGATTTCTTGATTGCTATTAGAATGGA 991
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 987 AGACAAATGCGTGAAAAATATTCAGAAGACGTTGGATTTCTTGATTGCTATTAGAATGGA 1046
Query 992 AACGCAATTTATCACGAAGATATTGCTGAGTCATATGGAGCTAATTGGTTCATGCTCTCT 1051
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1047 AACGCAGTTTATCACGAAGATTTTGCTGAGTCATATGGAGCTTATTGGTTCATGCTCTCT 1106
Query 1052 GCCAGCACCTAGAACTGCTTGTCTTAGCTTGAACGTTAGACAAGACGAGCTATGTCAGCT 1111
||||||||||||||||||||||||||| ||||| |||| |||||||||||||||| || |
Sbjct 1107 GCCAGCACCTAGAACTGCTTGTCTTAGTTTGAATGTTAAACAAGACGAGCTATGTAAGAT 1166
Query 1112 CTTAAAGAAAGAGCCTTTGAGATTGTTTAGTTTTGTTTCTACAACAAAGAAGAGAAAAAG 1171
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1167 CTTAAAGAAAGAGCCTTTGAGATTGTTTTGTTTTGTTTCTACAACGAAGAAGAGAAAAAG 1226
Query 1172 CAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACTGCGTTTCTGTTGAGGCT 1231
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 1227 CAAACCTCTTTCGGAAGACTCGAGGAAATACTTAGAGAAGACAGAGTTTTTGTTGAGGCT 1286
Query 1232 AGGGTATGTAGAAAACTCGGATGAGATGGTGAAGGCTCTGAAACAGTTTCGAGGCAGGGG 1291
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1287 AGGGTATGTAGAAAACTCGGATGAGATGGTGAAGGCTCTAAAACAGTTTCGAGGGAGGGG 1346
Query 1292 AGATCAGCTGCAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAACCATAATGTGGT 1351
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1347 AGATCAGCTACAGGAGAGATTTGATTGCCTTGTGAAAGCCGGTTTAAACTATAATGTGGT 1406
Query 1352 TACTGAGATCATCAGGCATGCTCCGATGATACTTAACCTGTCTAAAGATGTCATAGAGAA 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TACTGAGATCATCAGGCATGCTCCGATGATACTTAACCTGTCTAAAGATGTCATAGAGAA 1466
Query 1412 AAAGATACATTCCTTAACCGAACTTCTTGGCTATCCGATTGAATCCCTGGTAAGATTCCC 1471
|||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 1467 AAAGATACATTCCTTAACCGAACTTCTTGGCTATCCAATTGAATCATTGGTAAGGTTCCC 1526
Query 1472 GGCATATCTGTGTTATGATATGCAGAGGATACATCACAGATTCTCAATGTATTTATGGTT 1531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527 GGCATATCTGTGTTATGATATGCAGAGGATACATCACAGATTCTCAATGTATTTATGGTT 1586
Query 1532 GAGGGGAAGAGATGCAGCAAAGCCAATGCTGTCACCAAGCACTATTCTCACTTGCGGTGA 1591
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 GAGGGAAAGAGATGCAGCAAAGCCAATGCTGTCACCAAGCACTATTCTCACTTGCGGTGA 1646
Query 1592 TGCCCGGTTTGTGAAGTATTTTGTCAATGTCCACCCTGAAGGTCCAGCCATTTGGGAAAG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1647 TGCCCGGTTTGTGAAGTATTTTGTCAATGTCCACCCTGAAGGTCCAGCCATTTGGGAAAG 1706
Query 1652 TATAAACCAATCATCTACCTAAA-TTGAAGTTTTTTGGCTCTATT 1695
|||||||||||||||||||| || || ||| || ||||| |||||
Sbjct 1707 TATAAACCAATCATCTACCTGAAGTT-AAGGTTATTGGCACTATT 1750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83784709605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5