BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946217

Length=421
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19633.1 | Symbols:  | pseudogene of heat shock factor relat...   176    1e-43


> AT4G19633.1 | Symbols:  | pseudogene of heat shock factor related 
protein | chr4:10685517-10685997 REVERSE LENGTH=396
Length=396

 Score =  176 bits (95),  Expect = 1e-43
 Identities = 295/386 (76%), Gaps = 36/386 (9%)
 Strand=Plus/Plus

Query  21   ATGGCTCTCAATTTCCCAAAGGGAATT-GCTGCGTTC--CAT-GTGAAGGTATACAAGGT  76
            |||||||  ||||| ||||| || ||| | | | |||  ||| | ||| ||||| ||  |
Sbjct  1    ATGGCTCAAAATTTTCCAAATGG-ATTGGGTTCATTCTACATCG-GAATGTATA-AA-CT  56

Query  77   TGTGGAAGATCCTTCGA-CAGATGCAATAATCTCATGGGGC-AAAGACAACAACAGTTTC  134
             |||||||||||||| | | ||| || ||||| | | | || |||| ||||||  |||||
Sbjct  57   AGTGGAAGATCCTTC-ATCGGATCCAGTAATCCCGT-GAGCAAAAG-CAACAATGGTTTC  113

Query  135  GTCATTTGGAATCTGGAAGAGCTAATCAGCAGTAAGATACTTTGGAGATTCCACTGCATG  194
            ||||| || |||  |||||||| |||| |||||   ||||||   |||||||| |||  |
Sbjct  114  GTCATGTGTAATGAGGAAGAGCGAATCCGCAGT---ATACTTAATAGATTCCATTGC-GG  169

Query  195  -AAATTCCCCGAGTTTCACTCCGAGCTTAGGTATTATGGCTTTCA-AAGAATTAAG-A-A  250
             |||  | | ||||||| | ||||||| | ||||||||||||| | |||| ||||| | |
Sbjct  170  AAAACGCTCAGAGTTTCTCCCCGAGCTCAAGTATTATGGCTTT-ACAAGAGTTAAGAAGA  228

Query  251  TGG-GTCTGGGGAATGGGAA-TTTGCAAACGATGATTTTGTGAGAGGCCAACCTGAGCGT  308
             || || |||| ||| |||| || | ||| || |||||||||||||||||||||||||||
Sbjct  229  AGGAGTTTGGGAAAT-GGAACTTAG-AAA-GAAGATTTTGTGAGAGGCCAACCTGAGCGT  285

Query  309  TTGAA-GAACATGGTGATGAGAGCTATG-AGTAAGAACAGGGCCAAATTTAATGCTAGAG  366
            || || |  |||| || | | |||| || || ||  ||||||||||||| || |||| ||
Sbjct  286  TT-AATGGGCATGATGCTCAAAGCT-TGTAGGAACCACAGGGCCAAATTCAAAGCTAAAG  343

Query  367  AAGCAGTCAA-GGA-TCTGCAAAGTT  390
            |||||| ||| ||| | ||||| |||
Sbjct  344  AAGCAG-CAAAGGAAT-TGCAA-GTT  366



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19956296353


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5