BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946223 Length=1102 Score E Sequences producing significant alignments: (Bits) Value AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1160 0.0 > AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr4:10665294-10667318 FORWARD LENGTH=1892 Length=1892 Score = 1160 bits (628), Expect = 0.0 Identities = 966/1120 (86%), Gaps = 60/1120 (5%) Strand=Plus/Plus Query 3 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCCTAAACCTAAGCCTAAGCCTGAT 62 ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 633 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCATAAACCTAAGTCTAAGCCTGAT 692 Query 63 ATTTCATTGACAACGGTGAAAGTCGGAACCTTTTGGACAGTTTGCAATAGATGCAAGACA 122 ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 693 ATTTCATTGACAACGGTGAAAGTTGGAACCTTTTGGACGGTTTGCAATAGATGCAAGACG 752 Query 123 TATTGTGAATTTATGAGGGCTAGTTGTCTTAATAGGACCATACCTTGTCCAAACTGCGGT 182 |||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 753 TATTGTGAGTTTATGAGGGCTAGTTGTCTTAATAAGACTGTACCTTGTCCAAACTGCGGT 812 Query 183 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAATCAATGGGAGGCTAGTCATCAGA 242 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 813 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAGTCAATGGGAGGCTAGTCATCAGA 872 Query 243 CTGAGTCCTTCTAATCAGTCAACATGGAAAAGCA-CAAGTGAT-A--CTTCTTCAACTTC 298 ||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||| Sbjct 873 TTGAGTCCTTGTAATCAGTCAACATGGAAAAA-AGCAAGTGATGATACTTCTTCAACTTC 931 Query 299 AGCAATGGCAAA-AGCTGCACCCGAAAGAGTGAAAAGATGGTTTAACCCTATGCCTGAGC 357 |||||||||||| | ||| |||||||||||| |||||||||||| |||||||||||||| Sbjct 932 AGCAATGGCAAAGA-CTGTACCCGAAAGAGTTAAAAGATGGTTTGACCCTATGCCTGAGA 990 Query 358 TTGATTCTTCGACGGAAAAAGAGATAAAACTCGGTACCTTTTGGACAGTGTGCAATAGAT 417 | |||||||| ||| ||||| | | | ||||| |||||||||||||||| ||||| Sbjct 991 TGGATTCTTCAACGCAAAAA-A--T-----T-GGTACGTTTTGGACAGTGTGCAGTAGAT 1041 Query 418 GCAAGACACATTGTAAGTTGGTGAGGGCTAATTATCTTAACAAGACCTTCCCTTGTCCAA 477 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 1042 GCAAGACACATTGTAAGTTGGTGAGGGCTAATCATCTTAACAAGACCTTCCCTTGTCCTA 1101 Query 478 ACTGTAGTCAGGAATTCGTTGCGGCCGAGATGATTATAGAGATAATCAATGGGGGTCCAG 537 |||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 1102 ACTGCAGTCAGGAATTTGTTGCGGCCGAGATGATTATAGAGGTAATCAATGGGGGTCCAG 1161 Query 538 TCATAAAATTGAGTCCCTCTGTTCAGTCAAATAGCAAAAGTAGCAAAAGGACAAGTGCA- 596 |||||||||||||||||||||| ||||||||||||||||| | || | ||| | Sbjct 1162 TCATAAAATTGAGTCCCTCTGTGCAGTCAAATAGCAAAAGGA-CA------C--GTG-AT 1211 Query 597 GCTTCTTCCACAACCTCAGCATCTGATAACGCA-A-AG-ACTGCATATCAAAAAGAAGAC 653 ||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||| Sbjct 1212 GCTTCTTCCACAACCTCAGCATCTGATAAGGCACAGAGGACTGCATATCAAAAAGAAGAA 1271 Query 654 GTTTTGAAAAGAGAAAACATTGATCCTGATGTTGCATCTGCTGCTACTGGAGGAAATGTA 713 ||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| Sbjct 1272 GTTTTGAAAAGAGAAAAGATTGATCCTGATGTTGCGTCTGCTGCTACTGGAGAAAATGTA 1331 Query 714 CAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAACTCTACTACT 773 | | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1332 AAAGTAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAACGAAAACTCTACTACT 1391 Query 774 GAAGCAGGTAAT-GTAAAAGAAGCAGAGACTCTT-GTCGAGGAGCCGGTGACAACAGGCA 831 |||| ||| ||| ||||||||| ||||||| ||| | | |||||||| |||||||||| | Sbjct 1392 GAAGAAGG-AATTGTAAAAGAATCAGAGACCCTTTG-CAAGGAGCCGATGACAACAGGAA 1449 Query 832 ATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA----C-AGG 886 ||| |||||||||| |||||| || || | | | ||||||| || || | ||| Sbjct 1450 ATGAAAACTCTACTACTGAAGAAG-GAAA-TGTAAAAGAAGCAGA-GACCTTTTTCGAGG 1506 Query 887 AA---ATGCCAACC--CTAGTCTTGAAGCAG-AGAGAC--TTTTCAAGAAGCCGATGTCT 938 | ||| |||| | | | | ||| || |||||| ||||| || |||||||| | Sbjct 1507 AGCCGATGACAACAGGCAA-TGTAAAAGAAGTAGAGACCCTTTTCGAGGAGCCGATGACA 1565 Query 939 ACAGGAGAC-GAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAAC 997 |||| | | ||||||||||||| |||||| | ||||||||||| ||||||||| | || Sbjct 1566 ACAG-ACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTAC 1624 Query 998 AGGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGAT---ATGGCAACG 1054 |||| | | |||||||| || |||||| || || |||||| || | ||| |||| Sbjct 1625 AGGAGACGAAAACTCTACTCATGAAGCTCAAAG--GCTTTTCAAGAAGCCGATGACAACA 1682 Query 1055 GGAAATGCAATCTCGACTCTTGAAGT--AGAGAGGCTTTT 1092 |||||||||| ||| | |||||||| ||||| |||||| Sbjct 1683 GGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTT 1722 Score = 494 bits (267), Expect = 9e-139 Identities = 348/385 (90%), Gaps = 13/385 (3%) Strand=Plus/Plus Query 704 AGGAAATGTACAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAA 763 ||||| |||| | ||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 1397 AGGAATTGTAAAAGAATCAGAGACCCTTTGCAAGGAGCCGATGACAACAGGAAATGAAAA 1456 Query 764 CTCTACTACTGAAGCAGGTAATGTAAAAGAAGCAGAGA-CTCTTGTCGAGGAGCCGGTGA 822 |||||||||||||| ||| ||||||||||||||||||| || || ||||||||||| ||| Sbjct 1457 CTCTACTACTGAAGAAGGAAATGTAAAAGAAGCAGAGACCT-TTTTCGAGGAGCCGATGA 1515 Query 823 CAACAGGCAATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA 882 |||||||||||||||| | |||| ||||| |||||| || ||||||||| || Sbjct 1516 CAACAGGCAATGTAAA----A-----GAAGTAGAGACCCTTTTCGAGGAGCCGATGACAA 1566 Query 883 CAGGA-AATGCCAACCCTAGTCTTGAAGCAGAGAGACTTTTCAAGAAGCCGATGTCTACA 941 || || |||| ||| ||| || |||||||||||| |||||||||||||||||||||||| Sbjct 1567 CA-GACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTACA 1625 Query 942 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAACAGGA 1001 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1626 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAGAAGCCGATGACAACAGGA 1685 Query 1002 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1686 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1745 Query 1062 CAATCTCGACTCTTGAAGTAGAGAG 1086 ||||||| |||||| |||||||||| Sbjct 1746 CAATCTCTACTCTTAAAGTAGAGAG 1770 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54015786420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5