BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946223
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 1160 0.0
> AT4G19570.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr4:10665294-10667318 FORWARD LENGTH=1892
Length=1892
Score = 1160 bits (628), Expect = 0.0
Identities = 966/1120 (86%), Gaps = 60/1120 (5%)
Strand=Plus/Plus
Query 3 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCCTAAACCTAAGCCTAAGCCTGAT 62
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 633 CCTGAGCCTGATATTCCTATGCCTATGCCTACTAGGCATAAACCTAAGTCTAAGCCTGAT 692
Query 63 ATTTCATTGACAACGGTGAAAGTCGGAACCTTTTGGACAGTTTGCAATAGATGCAAGACA 122
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 693 ATTTCATTGACAACGGTGAAAGTTGGAACCTTTTGGACGGTTTGCAATAGATGCAAGACG 752
Query 123 TATTGTGAATTTATGAGGGCTAGTTGTCTTAATAGGACCATACCTTGTCCAAACTGCGGT 182
|||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 753 TATTGTGAGTTTATGAGGGCTAGTTGTCTTAATAAGACTGTACCTTGTCCAAACTGCGGT 812
Query 183 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAATCAATGGGAGGCTAGTCATCAGA 242
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 813 AAGTATTTCATTGCAACCGTGATACCTTCAGAGTTAGTCAATGGGAGGCTAGTCATCAGA 872
Query 243 CTGAGTCCTTCTAATCAGTCAACATGGAAAAGCA-CAAGTGAT-A--CTTCTTCAACTTC 298
||||||||| |||||||||||||||||||| | |||||||| | |||||||||||||
Sbjct 873 TTGAGTCCTTGTAATCAGTCAACATGGAAAAA-AGCAAGTGATGATACTTCTTCAACTTC 931
Query 299 AGCAATGGCAAA-AGCTGCACCCGAAAGAGTGAAAAGATGGTTTAACCCTATGCCTGAGC 357
|||||||||||| | ||| |||||||||||| |||||||||||| ||||||||||||||
Sbjct 932 AGCAATGGCAAAGA-CTGTACCCGAAAGAGTTAAAAGATGGTTTGACCCTATGCCTGAGA 990
Query 358 TTGATTCTTCGACGGAAAAAGAGATAAAACTCGGTACCTTTTGGACAGTGTGCAATAGAT 417
| |||||||| ||| ||||| | | | ||||| |||||||||||||||| |||||
Sbjct 991 TGGATTCTTCAACGCAAAAA-A--T-----T-GGTACGTTTTGGACAGTGTGCAGTAGAT 1041
Query 418 GCAAGACACATTGTAAGTTGGTGAGGGCTAATTATCTTAACAAGACCTTCCCTTGTCCAA 477
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1042 GCAAGACACATTGTAAGTTGGTGAGGGCTAATCATCTTAACAAGACCTTCCCTTGTCCTA 1101
Query 478 ACTGTAGTCAGGAATTCGTTGCGGCCGAGATGATTATAGAGATAATCAATGGGGGTCCAG 537
|||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1102 ACTGCAGTCAGGAATTTGTTGCGGCCGAGATGATTATAGAGGTAATCAATGGGGGTCCAG 1161
Query 538 TCATAAAATTGAGTCCCTCTGTTCAGTCAAATAGCAAAAGTAGCAAAAGGACAAGTGCA- 596
|||||||||||||||||||||| ||||||||||||||||| | || | ||| |
Sbjct 1162 TCATAAAATTGAGTCCCTCTGTGCAGTCAAATAGCAAAAGGA-CA------C--GTG-AT 1211
Query 597 GCTTCTTCCACAACCTCAGCATCTGATAACGCA-A-AG-ACTGCATATCAAAAAGAAGAC 653
||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||
Sbjct 1212 GCTTCTTCCACAACCTCAGCATCTGATAAGGCACAGAGGACTGCATATCAAAAAGAAGAA 1271
Query 654 GTTTTGAAAAGAGAAAACATTGATCCTGATGTTGCATCTGCTGCTACTGGAGGAAATGTA 713
||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1272 GTTTTGAAAAGAGAAAAGATTGATCCTGATGTTGCGTCTGCTGCTACTGGAGAAAATGTA 1331
Query 714 CAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAACTCTACTACT 773
| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1332 AAAGTAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAACGAAAACTCTACTACT 1391
Query 774 GAAGCAGGTAAT-GTAAAAGAAGCAGAGACTCTT-GTCGAGGAGCCGGTGACAACAGGCA 831
|||| ||| ||| ||||||||| ||||||| ||| | | |||||||| |||||||||| |
Sbjct 1392 GAAGAAGG-AATTGTAAAAGAATCAGAGACCCTTTG-CAAGGAGCCGATGACAACAGGAA 1449
Query 832 ATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA----C-AGG 886
||| |||||||||| |||||| || || | | | ||||||| || || | |||
Sbjct 1450 ATGAAAACTCTACTACTGAAGAAG-GAAA-TGTAAAAGAAGCAGA-GACCTTTTTCGAGG 1506
Query 887 AA---ATGCCAACC--CTAGTCTTGAAGCAG-AGAGAC--TTTTCAAGAAGCCGATGTCT 938
| ||| |||| | | | | ||| || |||||| ||||| || |||||||| |
Sbjct 1507 AGCCGATGACAACAGGCAA-TGTAAAAGAAGTAGAGACCCTTTTCGAGGAGCCGATGACA 1565
Query 939 ACAGGAGAC-GAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAAC 997
|||| | | ||||||||||||| |||||| | ||||||||||| ||||||||| | ||
Sbjct 1566 ACAG-ACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTAC 1624
Query 998 AGGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGAT---ATGGCAACG 1054
|||| | | |||||||| || |||||| || || |||||| || | ||| ||||
Sbjct 1625 AGGAGACGAAAACTCTACTCATGAAGCTCAAAG--GCTTTTCAAGAAGCCGATGACAACA 1682
Query 1055 GGAAATGCAATCTCGACTCTTGAAGT--AGAGAGGCTTTT 1092
|||||||||| ||| | |||||||| ||||| ||||||
Sbjct 1683 GGAAATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTT 1722
Score = 494 bits (267), Expect = 9e-139
Identities = 348/385 (90%), Gaps = 13/385 (3%)
Strand=Plus/Plus
Query 704 AGGAAATGTACAGGAAGCAGAGACCCTTTTCAAGGAGCCGATGACAACAGGAAATGAAAA 763
||||| |||| | ||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1397 AGGAATTGTAAAAGAATCAGAGACCCTTTGCAAGGAGCCGATGACAACAGGAAATGAAAA 1456
Query 764 CTCTACTACTGAAGCAGGTAATGTAAAAGAAGCAGAGA-CTCTTGTCGAGGAGCCGGTGA 822
|||||||||||||| ||| ||||||||||||||||||| || || ||||||||||| |||
Sbjct 1457 CTCTACTACTGAAGAAGGAAATGTAAAAGAAGCAGAGACCT-TTTTCGAGGAGCCGATGA 1515
Query 823 CAACAGGCAATGTAAACTCTACTCCTGAAGCAGAGAGACTTTTCAAGAAGCCGATGAAAA 882
|||||||||||||||| | |||| ||||| |||||| || ||||||||| ||
Sbjct 1516 CAACAGGCAATGTAAA----A-----GAAGTAGAGACCCTTTTCGAGGAGCCGATGACAA 1566
Query 883 CAGGA-AATGCCAACCCTAGTCTTGAAGCAGAGAGACTTTTCAAGAAGCCGATGTCTACA 941
|| || |||| ||| ||| || |||||||||||| ||||||||||||||||||||||||
Sbjct 1567 CA-GACAATGAAAACTCTACTCCTGAAGCAGAGAGGCTTTTCAAGAAGCCGATGTCTACA 1625
Query 942 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAAAAGCCGATGACAACAGGA 1001
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1626 GGAGACGAAAACTCTACTCATGAAGCTCAAAGGCTTTTCAAGAAGCCGATGACAACAGGA 1685
Query 1002 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1061
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1686 AATGCAAACTCTAATCTTGAAGCGCAGAGATGCTTTTTGAGGATATGGCAACGGGAAATG 1745
Query 1062 CAATCTCGACTCTTGAAGTAGAGAG 1086
||||||| |||||| ||||||||||
Sbjct 1746 CAATCTCTACTCTTAAAGTAGAGAG 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54015786420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5