BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946227

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G19520.1 | Symbols:  | disease resistance protein (TIR-NBS-L...   285    1e-76


> AT4G19520.1 | Symbols:  | disease resistance protein (TIR-NBS-LRR 
class) family | chr4:10639269-10647079 REVERSE LENGTH=5463
Length=5463

 Score =  285 bits (154),  Expect = 1e-76
 Identities = 174/184 (95%), Gaps = 0/184 (0%)
 Strand=Plus/Plus

Query  73    CCATTGGTGGTTGTTTAGGATGCTACTACTTGGGTCAAAATCAAGGGATAGCTAAAGCTG  132
             |||||||||||||| ||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct  5081  CCATTGGTGGTTGTGTAGGATGCTTCTACATGGGTCAAAATCAAGGGATAACTAAAGCTG  5140

Query  133   GCGGTGGCCTGACAATGCCAACTGCTTACCCGGCCGCACCACAAGCCAATCAAGGTTACA  192
             ||||||||| |||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  5141  GCGGTGGCCGGACAATGCCAACCGCTTACCCGGCTGCACCACAAGCCAATCAAGGTTACA  5200

Query  193   ATGCTGGAGCTAAACCTTACCCTCCTACGGCGTATGCTGTCTAATCATTCTGTTTATTCC  252
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  5201  ATGCTGGAGCTCAACCTTACCCTCCTACGGCGTATGCTGTCTAATCATTCTGTTAATTCC  5260

Query  253   ATGT  256
              |||
Sbjct  5261  CTGT  5264



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11662117768


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5