BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946241
Length=2219
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19380.1 | Symbols: | Long-chain fatty alcohol dehydrogenas... 3446 0.0
> AT4G19380.1 | Symbols: | Long-chain fatty alcohol dehydrogenase
family protein | chr4:10568365-10572412 REVERSE LENGTH=2367
Length=2367
Score = 3446 bits (1866), Expect = 0.0
Identities = 2107/2225 (95%), Gaps = 9/2225 (0%)
Strand=Plus/Plus
Query 1 ACTCACTGACACCACGTGAGATGGAATCTCTAGTTGCGATCTGCGATACCTTCATTTCCT 60
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 105 ACTCACTGACGCCACGTGAGATGGAATCTCTTGTTGCGATCTGCGATACCTTCATATCCT 164
Query 61 CCATCGACGGCTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTTTCCGCCT 120
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 165 CCATCGACGACTCTGGAGTAGGACACGTGGATGATTGCGTCGCTGGATATTTCTCCGCCT 224
Query 121 CCGCTTCTCAGACCGGAACTCCTGACCGCGTGGCGAGGTTGATGAGTGAGAGACTTCACC 180
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 225 CCGCTTCTCAGACCGGAACTCCCGACCGCGTGGCGAGGTTAATGAGTGAGAGACTTCACC 284
Query 181 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAACTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 285 ACCCAAAGAAGTGGATACTAAGAGCTGGATTGTGGTTACTCTCTACTTGGATCGGAAGTC 344
Query 241 TAATCTTGTGTGGTCGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 300
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 TAGTCTTGTGTGGTTGGAGAAGTTTCACCGGCGAGTTTCCTTACTTCCGGAGATTCTGCC 404
Query 301 GGCTTCCGGAGAAACAGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 GGCTTCCGGAGAAACGGAGAGAAGAGATATTGCTGAATTGGTCTTCAAGCTATTTCTCAC 464
Query 361 TCCTTAGAATGTTCTTTAGGTCCATCAAACTTATCACTGCCTTTGTCTTCTTCACTCAGG 420
| ||||||||||| |||||| ||||||||||||| | |||| ||||||||||||||||||
Sbjct 465 TTCTTAGAATGTTATTTAGGACCATCAAACTTATAAGTGCCCTTGTCTTCTTCACTCAGG 524
Query 421 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAAGTTACAATGGACCCAGCTCTG 480
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 525 TTGATGAAAAAGGAAGGAACTTGGCGTGGAAAGCAATAGGTTACAATGGACCCAGCCCTG 584
Query 481 ATCATAGTGATCATGAAGTAGAACT-AA--ATGAGAAGATGCAGAAGAAACGTGAGGAGA 537
||||||||||||||||||||||||| || | ||||||| | ||||||||| ||||||||
Sbjct 585 ATCATAGTGATCATGAAGTAGAACTAAACGAGGAGAAGAAGAAGAAGAAACCTGAGGAGA 644
Query 538 TCTTTGGACCACTTTACAATGGCATCATCGATCTACAAAGCCCTAGAGAAGCCGTGGCAA 597
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||| ||
Sbjct 645 TCTTTGGACCACTTTACAATGGCATCGTTGATCTAAAAAGCCCTAGAGAAGCCGTGGAAA 704
Query 598 AGAAGTTAACCGGTCATGGATTCACAGTTTCAACTCAAAAGAGGAACACAAACGGATCAT 657
||||| || |||||| ||| ||| ||||||||| |||||||||||| |||||||||||||
Sbjct 705 AGAAGCTAGCCGGTCGTGGGTTCGCAGTTTCAAATCAAAAGAGGAATACAAACGGATCAT 764
Query 658 CTATCTCTGACCCGGTGATGACAATCCGGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 717
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 765 CTATCTCTGACCCGGTGATGAAAATCCAGTGTGATGCTGTGGTGGTTGGGTCTGGATCCG 824
Query 718 GTGGAGGAGTAGTGGCTGGAGTTTTAGCCAAGGCGGGTTATAAAGTATTGGTGGTGGAGT 777
|||||||||| | ||| ||||| ||||||||||| ||||| ||||| |||||| | ||||
Sbjct 825 GTGGAGGAGTGGCGGCAGGAGTGTTAGCCAAGGCTGGTTACAAAGTGTTGGTGATTGAGT 884
Query 778 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCAATGGATGATA 837
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 885 CAGGGAATTACTATGCAAGAAGCAAACTTTCTTTACTTGAAGGGCAAGCTATGGATGACA 944
Query 838 TGTACTTATCCGGTGGGTTATTAGCGACGTCTGACACGAACGTAGTGATTCTTGCGGGGT 897
|||| |||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 945 TGTATTTATCCGGTGGGTTATTAGCGACGTCCGATACGAACGTAGTGATTCTTGCGGGAT 1004
Query 898 CCACGGTCGGAGGTGGTTCGACAATCAATTGGTCCGCCTCGATCAAGACACCGGAACATG 957
|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1005 CCACAGTCGGAGGTGGTTCTACAATCAATTGGTCCGCCTCGATCAAGACACCAGAACATG 1064
Query 958 TGATGAAGGAATGGGCAGAAAAATCAAAACTCGAAATGTTCGGAAGTAATTTGTATCGAG 1017
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 1065 TGATGAAGGAATGGGCAGAAAAGTCAAAACTCGAAATGTTCGGAAGTGATTTGTATCGAG 1124
Query 1018 AGGCAATGGATGTTGTCTGTGAGAGAATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1077
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1125 AGGCAATGGATGTTGTCTGTAAGAGGATGGGTGTTCAATGCGGATTTGTAGAAGAAGGGT 1184
Query 1078 TTAATAATGAGATATTGAGAAAGGGTTGTGAAGAGTTAGGGTTACCAGTAAAGAATATTC 1137
||||||||||| |||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 1185 TTAATAATGAGGTATTGAGAAAAGGTTGTGAAAAGTTAGGGTTACCAGTGAAGAATATTC 1244
Query 1138 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGCTGCTTGGGATGCAAGAAAGGTC 1197
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 1245 CGAGGAATGCTCCATCCGATCATTACTGTGGGTTTTGTTGCTTGGGTTGCAAGAAAGGTC 1304
Query 1198 AAAAGCAAGGGACTTCAGAGACATGGCTTGTAGATTTGGTGGAATCTGGTAACGGTTTAA 1257
||||||| |||||||||||||| ||||||||||||||||||||||||| ||| |||||||
Sbjct 1305 AAAAGCAGGGGACTTCAGAGACTTGGCTTGTAGATTTGGTGGAATCTGATAATGGTTTAA 1364
Query 1258 TCCTTCCAGGTTGTGAAGCGATGGAAGTCTTGTACGACTGTGGAA-GGGGGAAGAAGAAG 1316
|||||||||||||| |||||| ||||||| ||||||||||| ||| |||||||||||||
Sbjct 1365 TCCTTCCAGGTTGTCAAGCGACGGAAGTCATGTACGACTGT-GAACAGGGGAAGAAGAAG 1423
Query 1317 AAGGCGACTGGAGTTGCGTTTGCATATGGGGAAGAGATTTATGTGGTAGAGTCTAAAGCG 1376
||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||| || |
Sbjct 1424 AAGGCAACTGGAGTTGCGTTTGCGTTTGGGGAAGAGATTTATGTGGTGGAGTCTAGAGTG 1483
Query 1377 ACGGTAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGGAGCGGTTTGAAG 1436
|| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1484 ACAATAGTGGCTTGCGGTGCGCTTAGAACGCCGCATCTGTTGAAACGTAGCGGTTTGAAG 1543
Query 1437 AATGGTAACATTGGGAGAAACCTTTGTTTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1496
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1544 AATAGTAACATTGGGAGAAACCTTTGTCTACATCCGGTTGTTATGGCTTGGGGATGGTTT 1603
Query 1497 CCAGATGAAGATAAATGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGAGGAATAATGACC 1556
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1604 CCAGAGGAAGATAAGTGGCCGGAAAAGAAGAAAAAGAGCTACGAGGGGGGAATAATGACT 1663
Query 1557 GCGATGTCTAGCGTTGTAAATGCAGAGACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1616
||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||
Sbjct 1664 GCGATGTCTAGCGTTGTAATTGAAGAAACGCATAGTTCTTATGGTGAAATGGTTATCCAG 1723
Query 1617 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCTTGGACATCAAGCAAGGAT 1676
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1724 ACACCTGCTCTACATCCAGGAATGTTCTCAGGGATCATTCCCTGGACATCAAGCAAGGAT 1783
Query 1677 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1784 TTCAAAACCCGAATGCTCAAATTTTCAAGAACCGCACACATTTTTGCGCTTCTGAGAGAT 1843
Query 1737 AAAGGAACCGGAACAATAAATTCCAAGAGCTACATTGACTACAACTTAAACGATGAAGAC 1796
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1844 AAAGGAACCGGAACAATAGATTCCAAGACCTACATTGACTACAACTTAAACGATGAAGAC 1903
Query 1797 GAAGAGAGTCTAAAGAGTGGTCTTGATAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCT 1856
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1904 GAAGAGAGTCTAAAGAACGGTCTTGAAAGAGTCTTGAAGATTCTGGCCGCAGCCGGAGCC 1963
Query 1857 GAGGAGATTGGGACGCATCATTCAGAAGGTAAGAGTTTGAATGTTAGAACAGCGAGTACG 1916
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||
Sbjct 1964 GAGGAGATTGGGACGCATCATTCAGAAGGTAGGAGTCTGAATGTTAGAACAGCGAGTTCG 2023
Query 1917 TTAGAGATTGAACGGTTTGTGAGAGAAGAAAGTTCGAAGCCGTTGAAGGATTTGTCAGGT 1976
||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 2024 TTAGAGATTGAGCGGTTTGTGAGAGAAGAGAGTTCAAAGCCGTTGAAGGATTTGTCAGGT 2083
Query 1977 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2084 CAGATATGTTCAGCTCACCAAATGGGAAGTTGTAGGATGGGAATTAGGCCGGAGGAATCC 2143
Query 2037 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAGGGTTATTTGTGGCGGACACAAGT 2096
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2144 GCGGTGAGGCCAACAGGAGAGACTTGGGAGGTCGAAAGGTTATTTGTGGCGGACACAAGT 2203
Query 2097 GTTTTTCCGACGGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2156
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2204 GTTTTTCCGACCGCTTTAGGGGTTAATCCGATGGTCACCGTTCAGTCTATTGCTTATTGT 2263
Query 2157 ATTGGACTTAATGTTGTTGATGTTCTTAAGAGGAAGAAATGAGG-TACCATCTGTTCT-A 2214
||||||||||||||||||||||||||||||| |||||| ||||| | | ||| ||| | |
Sbjct 2264 ATTGGACTTAATGTTGTTGATGTTCTTAAGAAGAAGAAGTGAGGGTTC-ATCAGTT-TGA 2321
Query 2215 AATAG 2219
|||||
Sbjct 2322 AATAG 2326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110089795185
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5