BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946251
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19200.1 | Symbols: | proline-rich family protein | chr4:10... 625 2e-178
AT5G45350.1 | Symbols: | proline-rich family protein | chr5:18... 147 2e-34
> AT4G19200.1 | Symbols: | proline-rich family protein | chr4:10498876-10500722
FORWARD LENGTH=974
Length=974
Score = 625 bits (338), Expect = 2e-178
Identities = 520/598 (87%), Gaps = 51/598 (9%)
Strand=Plus/Plus
Query 6 GGTTTTAAGTGAAAAA-CAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCATGACAA 64
||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| || ||
Sbjct 84 GGTTTAAAGTAAAAAAGCAATGGGAGGTGGTAAAGACAAGCATCATGATGAGCAAGAGAA 143
Query 65 AGGGTTTCATGGTTTTCCAGGAGGAGGACATCATTACCCACCTGCTCAAGGAGGGTATCC 124
||| |||||||||||||||||||| |||||| | ||||||||||||||||||| || ||
Sbjct 144 AGGATTTCATGGTTTTCCAGGAGGTGGACAT--T-ACCCACCTGCTCAAGGAGGTTACCC 200
Query 125 TCCACAAGGTTACCCACCACAA---GGGTATCCTCCAGCTGGAGGCTATCCGCCTGCTGG 181
||| |||||||||||||||||| ||||||||||||||||||||||| || ||||| ||
Sbjct 201 TCCTCAAGGTTACCCACCACAACAAGGGTATCCTCCAGCTGGAGGCTACCCACCTGCCGG 260
Query 182 ATATCCTCCTGGTGCATACCCTGCTGCACCCGGTGGTTATCCTCCTGC---TGG------ 232
||||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 261 ATATCCTCCTGGTGCTTACCCTGCTGCGCCCGGTGGTTATCCTCCTGCACCTGGAGGTTA 320
Query 233 C--T----------ATCCTGCACCTGGAGCTCACCATTCAGGACATTCTAGTGGTGGAAT 280
| | ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 321 CCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTGGTGGTGGACT 380
Query 281 CGGAGGCATGATAGCAGG-G--GCTG---CAGC---AGC--CT-ATGGAGCTCACCATGT 328
|||||||||||||||||| | |||| |||| ||| || ||||||||||||||||
Sbjct 381 CGGAGGCATGATAGCAGGTGCAGCTGGTGCAGCCGCAGCAGCTTATGGAGCTCACCATGT 440
Query 329 TGGTCATGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGG 388
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TGGTCACGCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGGAGGGTATGGCCATGC 500
Query 389 CCCTGCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAGG 448
|||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||
Sbjct 501 CCCTGCTCATGGCTTTGGCCATGGTGGTCATGGTAAATTCAAGCACGGAAAGCATGGAGG 560
Query 449 CAAATTCAAGCACGGAAAGCATGGAAAGCATGGCAAGCACGGGAAACATGGTATGTTTGG 508
|||||||||||||||||||||||||||||| | | || |||||||| ||||||||
Sbjct 561 CAAATTCAAGCACGGAAAGCATGGAAAGCA---C--G---GG-AAACATGGCATGTTTGG 611
Query 509 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAAACCC-C-TTTGATCCTCT 564
|||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||
Sbjct 612 AGGAGGAGGCAAATTCAAGAAGTGGAAGTAATCTCAAAAACCCCACCTTTGATCCTCT 669
> AT5G45350.1 | Symbols: | proline-rich family protein | chr5:18381837-18383699
REVERSE LENGTH=862
Length=862
Score = 147 bits (79), Expect = 2e-34
Identities = 209/267 (78%), Gaps = 28/267 (10%)
Strand=Plus/Plus
Query 213 GGTGGTTATCCTCCTGCTGGCTATCCTGCACCTGGAGCTCACCATTCAGGACATTCTAGT 272
|||||||| ||||||||||||||||||| || | ||| | |||||||| | |
Sbjct 321 GGTGGTTACCCTCCTGCTGGCTATCCTG---CT-CA--TCA-C--TCAGGACACGC-A-- 368
Query 273 GGTGGAATCGGAGGCATGATAGCAGGGGCTGCAGCAGCCTATGGAGCTCACCATGTTGGT 332
|| ||||| || || ||||| ||||| |||||||| ||||||||||||||||| || | |
Sbjct 369 GGAGGAATTGGGGGTATGATTGCAGGTGCTGCAGCTGCCTATGGAGCTCACCACGTAGCT 428
Query 333 CAT-GCCTCTCACAACCCTTACGGGCATGCTGTAGGACATGG--A-GGGTATGGCCATGG 388
||| | ||||||| |||||||| ||||| | | | |||| | || | |||||||||
Sbjct 429 CATAG-CTCTCACGGTCCTTACGGACATGC--T-GCATATGGTCACGGTTTTGGCCATGG 484
Query 389 CCCT-GCTCATGGCTTTGGTGGTCATGGTCATGGTAAGTTCAAGCATGGAAAGCATGGAG 447
| | ||| ||||| | |||||||||||||||||||||||||||||| ||||| || |
Sbjct 485 TCATGGCT-ATGGC--T-ATGGTCATGGTCATGGTAAGTTCAAGCATGGGAAGCACGG-G 539
Query 448 GCAAATTCAAGCACGGAAAGCATGGAA 474
|| |||||||| || ||||||||||
Sbjct 540 --AAGTTCAAGCATGGGAAGCATGGAA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5