BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946256
Length=1840
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid d... 2724 0.0
> AT4G19170.1 | Symbols: NCED4, CCD4 | nine-cis-epoxycarotenoid
dioxygenase 4 | chr4:10481786-10483857 FORWARD LENGTH=2072
Length=2072
Score = 2724 bits (1475), Expect = 0.0
Identities = 1733/1856 (93%), Gaps = 24/1856 (1%)
Strand=Plus/Plus
Query 3 aaaaacaaaaaCAGAGCAATGGActctgtttcttcttcttccttcatctcctccacattc 62
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 32 AAAAACAAAAGGAGAGCAATGGACTCTGTTTCTTCTTCTTCCTTCCTCTCCTCCACATTC 91
Query 63 tctcttcaccactctcttcttcgccgccgatcttcctctcct-ctcctcctccGTATCAA 121
|||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 92 TCTCTTCATCACTCTCTTCTTCGCCGCCGATCTTCCTCTCCTACT-CTCCTCCGTATCAA 150
Query 122 CTCCGCAGTCGTCGAAGAACGTACTCCGATCACGAACCCAAGCGACAACAATGATCGTCG 181
|||||| ||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 151 CTCCGCCGTCGTCGAAGAACGTTCTCCAATCACAAACCCAAGCGACAACAATGATCGTCG 210
Query 182 TAACAAACCCAAAAAACTCCACAACCGAACCAATCACACCGCAGTCTCTTCTCCTGCGAA 241
|||||||||||||| ||||||||||||||||||||||||| |||||| || || ||||
Sbjct 211 TAACAAACCCAAAACACTCCACAACCGAACCAATCACACCTTAGTCTCATCACCACCGAA 270
Query 242 ACCCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 301
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ACTCCGACCAGAAATGACTCTCGCAACAGCTCTCTTCACCACCGTCGAAGATGTAATCAA 330
Query 302 CACGTTCATCGATCCACCGTCACGTCCTTCCGTCGATCCAAAACACGTTCTCTCCGATAA 361
|||||||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||
Sbjct 331 CACGTTCATCGATCCACCTTCACGTCCTTCCGTTGATCCAAAACATGTCCTCTCTGATAA 390
Query 362 CTTCGCTCCTGTTCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCTCTCT 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 391 CTTCGCTCCTGTCCTCGACGAGCTTCCTCCAACAGACTGTGAAATCATCCACGGCACTCT 450
Query 422 TCCGCCGTCACTCAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 481
||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 451 TCCACTGTCACTTAACGGCGCTTACATCCGTAACGGTCCAAATCCACAGTTTCTCCCTCG 510
Query 482 TGGTCCTTACCATCTCTTTGACGGCGACGGTATGCTTCACGCGATTCGTATCCATAATGG 541
|||||||||||||||||| ||||||||||||||||||||||| || ||||| || ||
Sbjct 511 TGGTCCTTACCATCTCTTCGACGGCGACGGTATGCTTCACGCCATAAAAATCCACAACGG 570
Query 542 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAGTACAACGTGGAGAAACAAAC 601
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 571 TAAAGCCACTCTCTGTAGCAGATACGTCAAGACTTATAAATACAACGTCGAGAAACAAAC 630
Query 602 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTTAACGGTGTAACGGCATCAGTAGC 661
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 631 CGGAGCTCCGGTTATGCCTAACGTGTTTTCCGGATTCAACGGTGTAACGGCGTCAGTAGC 690
Query 662 TCGTGGAGCTTTAACGGCGGTTAGAGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 721
|||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 691 TCGTGGAGCTTTAACGGCAGCTAGGGTTTTAACCGGACAGTATAATCCGGTTAACGGCAT 750
Query 722 TGGTTTAGCTAATACAAGTCTTGCTTTCTTCTGTAACCGTCTCTTCGCTTTAGGAGAATC 781
||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||||
Sbjct 751 TGGTTTAGCTAATACAAGTCTAGCTTTCTTCAGTAACCGTCTCTTTGCTTTAGGTGAATC 810
Query 782 TGATTTACCCTACGTCGTCCGATTAACTGATTCTGGAGATATTGAAACGATCGGACGGTA 841
|||||||||||||| |||||||||||| || || ||||||||||||||||||||||||||
Sbjct 811 TGATTTACCCTACGCCGTCCGATTAACCGAATCAGGAGATATTGAAACGATCGGACGGTA 870
Query 842 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCAAAAATCGATCCAATAAC 901
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 871 CGATTTCGACGGGAAATTAGCGATGAGTATGACAGCTCATCCTAAAACCGATCCAATAAC 930
Query 902 CGGAGAGACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACGTTTTTCCGGTT 961
|||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 931 CGGAGAAACTTTCGCTTTCCGGTACGGTCCGGTTCCACCGTTTTTAACATATTTCCGGTT 990
Query 962 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 TGATTCCGCCGGGAAAAAACAAAGAGACGTTCCGATATTCTCGATGACGTCTCCGTCGTT 1050
Query 1022 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCGGAGATTCAGATTGGGAT 1081
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||
Sbjct 1051 TCTCCATGACTTCGCGATCACGAAACGTCACGCGATTTTCGCAGAGATTCAGCTTGGCAT 1110
Query 1082 GAGGATGAATCC-GATGGATTTGATGTT-T-GAAGGTGGTTCTCCGGTTGGTAATGATAA 1138
||||||||| | | |||||||| ||| | |||||||||||||||||||||| ||||||
Sbjct 1111 GAGGATGAA-CATGTTGGATTTG--GTTCTCGAAGGTGGTTCTCCGGTTGGTACTGATAA 1167
Query 1139 CGGAAAAACACCGAGGCTTGGAGTGATTCCAAAGTACGCCGGAGATGAATCGGAGATGAA 1198
||||||||| || ||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1168 CGGAAAAACTCCAAGGCTTGGAGTGATTCCTAAGTACGCCGGAGATGAGTCGGAGATGAA 1227
Query 1199 ATGGTTCGAAGTTCCTGGATTTAATATCATTCACGCCATTAATGCTTGGGATGAAGACGA 1258
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 1228 ATGGTTCGAAGTTCCTGGATTCAATATCATTCACGCTATTAATGCTTGGGATGAAGATGA 1287
Query 1259 TGGAAACTCCGTCGTTTTGATCGCTCCGAATATTATGTCAATTGAACATACTTTAGAGAG 1318
||||||| |||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 1288 TGGAAACAGCGTCGTTTTGATTGCACCGAATATTATGTCGATTGAACATACTTTAGAGAG 1347
Query 1319 GATGGATTTGGTTCACGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGAATTGT 1378
||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1348 GATGGATCTGGTTCATGCTTTGGTGGAGAAGGTGAAGATCGATCTCGTCACCGGGATTGT 1407
Query 1379 GACACGTCATCCGATTTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1438
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1408 GAGACGTCATCCGATCTCAGCGAGGAATCTCGATTTCGCTGTGATTAATCCGGCGTTTCT 1467
Query 1439 CGGAAGACAG-AGCAGGTACGTTTACGCGGGGATTGGAGATCCGATGCCGAAAATCTCCG 1497
||| ||| | ||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 1468 CGGGAGAT-GTAGCAGGTACGTTTACGCGGCGATTGGAGATCCGATGCCGAAGATCTCCG 1526
Query 1498 GAGTTGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGCACGGTGGCGCGTAAAA 1557
| || |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||
Sbjct 1527 GTGTGGTGAAGCTTGATGTGTCTAAAGGAGATCGGGATGATTGTACGGTGGCCCGTAGAA 1586
Query 1558 TGTACGGTAAAGGTTGTTACGGTGGTGAACCGTTTTTCGTAGCTAGGGATCCTGGGAATC 1617
|||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1587 TGTACGGTTCAGGTTGTTACGGCGGAGAACCGTTTTTCGTAGCTAGGGATCCTGGTAATC 1646
Query 1618 CGGAGGCGGAGGAGGATGATGGTTACGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1677
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1647 CGGAGGCGGAGGAGGATGATGGTTATGTGGTGACGTATGTTCACGATGAAGTGACTGGAG 1706
Query 1678 AATCGAAGTTTCTGGTGATGGACGCAAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1737
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1707 AATCGAAGTTTCTGGTGATGGACGCTAAATCGCCGGAGCTTGAAATCGTCGCCGCCGTGA 1766
Query 1738 GGCTACCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTGAAGGAGAGTGACCT-A 1796
|| | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1767 GGTTGCCGCGAAGGGTTCCGTACGGATTCCATGGGTTATTTGTCAAGGAAAGTGACCTTA 1826
Query 1797 A----CT--A----TA--GGTAACTGCAATAGTTAGTGGAATAATTAAGTTCTTAA 1840
| || | || ||||||||||||||||| | |||||||||||| |||||
Sbjct 1827 ATAAGCTTTAACAATATAGGTAACTGCAATAGTTAATAGAATAATTAAGT-CTTAA 1881
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91063788630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5