BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946268
Length=3021
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19080.1 | Symbols: | Protein of unknown function (DUF594) ... 880 0.0
AT4G19070.1 | Symbols: | Putative membrane lipoprotein | chr4:... 708 0.0
AT5G45540.1 | Symbols: | Protein of unknown function (DUF594) ... 174 4e-42
> AT4G19080.1 | Symbols: | Protein of unknown function (DUF594)
| chr4:10448813-10449796 REVERSE LENGTH=984
Length=984
Score = 880 bits (476), Expect = 0.0
Identities = 784/928 (84%), Gaps = 39/928 (4%)
Strand=Plus/Plus
Query 1541 TAGATTCTGGTTTGGGATTCC-TCTGATTAACTATCTCTTGGAATTCTTCGGTATCCCAG 1599
||||||||| || || ||||| | |||| ||||||||| | ||||||||| | ||| |||
Sbjct 66 TAGATTCTGCTTAGGAATTCCGT-TGATCAACTATCTCCTAGAATTCTTCAGCATCTCAG 124
Query 1600 ATCAGCTAAACGAGATAGTATTCACATCCCATACACGCCTCACGAAAGAGCTTTGGGAAT 1659
||||| |||| |||||||| |||||||||| ||||||||||| |||||||| |||||||
Sbjct 125 ATCAGGTAAATGAGATAGTGTTCACATCCCGCACACGCCTCACCAAAGAGCTCTGGGAAT 184
Query 1660 TCATATTTGAGGAGGTTAAGCGTAGATCCCTCTTAGTTGTTGGCTCAGAAAGTGACAGCT 1719
|||||||||| ||||| |||| |||||| |||||||||||||| || ||||||| ||||
Sbjct 185 TCATATTTGAAGAGGTCAAGCATAGATCGCTCTTAGTTGTTGGATCGGAAAGTGCCAGCC 244
Query 1720 ACATATATTCGGCTAGAGGTGACTGGATTCTGAGGGATATG-AGAGTAGGGGA-TATTCA 1777
| ||||||||||||||||| |||||||||||| | |||||| | | | | ||| |||| |
Sbjct 245 ATATATATTCGGCTAGAGGCGACTGGATTCTGCGCGATATGCA-AATCGAGGATTATT-A 302
Query 1778 CGAGAAACTGCTG-CAGTATGTTACTGAAGTGGATTACGATCAGAGCATTCTGGTGTGGC 1836
|||||||| ||| || ||||| ||||||||||| || |||||| |||||||||||||||
Sbjct 303 TGAGAAACTCCTGCCA-TATGTCACTGAAGTGGAGTATGATCAGGGCATTCTGGTGTGGC 361
Query 1837 ACGTCGCCACGGAGCTCTTACACCAAACACAAGTAGACAATGCAGCAAGAAATGTCAGAT 1896
|||| || || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 362 ACGTTGCAACTGAGCTCTTACACCAAACAGAAGTAGACAATGCAGCAAGAAATGTCAGAA 421
Query 1897 GCAACGAGTTCAGCAAAACC-TTATCAGACTACATGATGTACCTGTTAATCGTGCAG-CC 1954
|||| |||| |||||||||| || |||||||||||||||||||| ||| ||| || ||
Sbjct 422 GCAAAGAGTACAGCAAAACCATT-TCAGACTACATGATGTACCTCTTAGTCGCACAATCC 480
Query 1955 GTCTATGATGTCAACAGTTGCGGGAATCAACAAGTTAAGATTCAGAGAGGCGATAGCAGA 2014
||| | |||||||||||||| ||||| | ||| ||| ||||| ||| || ||||||||
Sbjct 481 -TCTCTTATGTCAACAGTTGCAGGAATTGATAAGATAAAATTCAAAGACGCTATAGCAGA 539
Query 2015 AGCCAAAAACTTTCAAGAGGCTAAAACGCTGTTTCAGAGGACGCATGTTGAGGATTCGAG 2074
||||||||||| | |||||||||||| ||||||||||| || ||||||||||| ||| ||
Sbjct 540 AGCCAAAAACTCTAAAGAGGCTAAAAAGCTGTTTCAGAAGATGCATGTTGAGGGTTCAAG 599
Query 2075 AGATGCAAAGAAGGCCTGTAAAGAAATAATGGATTCCTATAAGAAAGTAGAGCGAAG-AT 2133
||||||||||||||||||| || ||| ||||||||| || | || | |||| | | |
Sbjct 600 AGATGCAAAGAAGGCCTGTGCAGCAATTGTGGATTCCTTTACGGAATTTGAGCTAGGGA- 658
Query 2134 ATGAGAACACCAAA-GGATACCAAAGCAAGTCTGTGCTAGT-CCAAGCGAATATACTAGC 2191
||| |||| ||| | || || ||||||||||| || | || |||||||| || |||||
Sbjct 659 ATGGGAACGCCAGACGG-TATCAAAGCAAGTCCATGTT-GTTCCAAGCGAGCATGCTAGC 716
Query 2192 GAAGGAGCTTCAGCGGATAG-A--TG---G------TGA--CA-TGTGGGAAGTAGTGAG 2236
||||||||||| || ||| | || | ||| || ||||| ||||||||||
Sbjct 717 GAAGGAGCTTCTGCATATAACAAATGAAAGAGGCAATGATGCAATGTGGAAAGTAGTGAG 776
Query 2237 CAAAGTGTGGGTGGAGATGCTTTGCTATGCAGCAACTCACTGTGATTCTAAACAACATGC 2296
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 777 CAAAGTGTGGGTGGAGATGCTTTGCTACGCAGCAACTCACTGTGATTCTAAACAACATGC 836
Query 2297 AGCTCAGCTCAACAAAGGTGGTGAATTGATCAACTTTGTTTGGCT-TCTGATGGCTCATT 2355
|||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||||
Sbjct 837 AGCTCAACTCAACAAAGGTGGTGAACTGATCAACTTTGTTTGGCTAT-TGATGGCTCATT 895
Query 2356 TCGGACTCGGAGAGCAATTCCTGACCACCAAGGAAGATTCTAGAGCCAGACTGGTTCTGG 2415
|||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||
Sbjct 896 TCGGACTCGGAGAGCAATTCAGGACCACCAAGGAAGATTCTAGAGCCACACTGATTCTT- 954
Query 2416 AC-AAAGCCA-CTACTTCTTGCCTTGTG 2441
|| ||| | | | || ||||||||||||
Sbjct 955 ACCAAAACAAGC-ACCTCTTGCCTTGTG 981
> AT4G19070.1 | Symbols: | Putative membrane lipoprotein | chr4:10446340-10448190
REVERSE LENGTH=1057
Length=1057
Score = 708 bits (383), Expect = 0.0
Identities = 429/452 (95%), Gaps = 0/452 (0%)
Strand=Plus/Plus
Query 2441 GAGATATGAGAAATGGAATCCCGTGCATCCTACTTATGGAGCATTTTGGGGTATGGGGAT 2500
||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 144 GAGATATGAAAAATGGAATCCTGTGCATCCTACTTATGGAGCATTTTGGGGAATGGGGAT 203
Query 2501 TGGGATTGGTTGTGGCGTCGGATGGGGACCTGGTTTTGGCCCTGAGGTCATTGGTTATGT 2560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 TGGGATTGGTTGTGGCGTCGGATGGGGACCTGGTTTTGGCCCTGAGGTCATTGGTTATGT 263
Query 2561 TGGTGCAGGCTGCGGCGTTGGTTTTAGTGTTGGCATAACACTTGCTGGTCTCGGCATTGG 2620
||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 264 CGGTGCTGGCTGCGGTGTTGGTTTTAGTGTTGGTATAACACTTGCTGGTCTCGGCATTGG 323
Query 2621 TCTCCCCACCAATTTTCTTCTTGCAGCTCCTTATAACACTGTCGAAGCAACTAGAAAGGG 2680
||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 324 TCTTCCCACAAATTTTCTTCTTGCAGCTCCTTATAACACTGTGGAAGCAACTAGAAAGGG 383
Query 2681 TGCTTTTAATTTGTTTGGTAAAAATCTCTCAACCGATGGTTGGAGCGATTTTATGCCTCA 2740
|||||||||||| ||||||||||| ||||||||| |||||||||| ||||| ||||||||
Sbjct 384 TGCTTTTAATTTCTTTGGTAAAAACCTCTCAACCAATGGTTGGAGTGATTTGATGCCTCA 443
Query 2741 AATCGCGGGGTTGCAGAGACAAGTCAGTGAGATGTGCTCTGGTTTTCACAAGAAGCCTCA 2800
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 444 AATCGCGGGGTTGCAGAGACAAGTCAGTGAGATATGCTCTGGTTTTAACAAGAAGCCTCA 503
Query 2801 CTTAAATAATGCCATTGACATTAAAAGTTTTCCATTGTTCATTTCACATGATTGTGGAAA 2860
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||| ||
Sbjct 504 TTTAAATAATGCCATTGACCTAAAAAGTTTTCCTTTGTTCATTTCACATGATTGTGGCAA 563
Query 2861 ATTTGGGAGTCATCTTCTCCATGTGCGCAAAG 2892
|||||| |||||||||||||||||||||||||
Sbjct 564 ATTTGGAAGTCATCTTCTCCATGTGCGCAAAG 595
> AT5G45540.1 | Symbols: | Protein of unknown function (DUF594)
| chr5:18458154-18460821 REVERSE LENGTH=2668
Length=2668
Score = 174 bits (94), Expect = 4e-42
Identities = 162/194 (84%), Gaps = 8/194 (4%)
Strand=Plus/Plus
Query 2218 ACATGTGGGAAGTAGTGAGCAAAGTGTGGGTGGAGATGCTTTGCTATGCAGCAACT-CAC 2276
||||||||||||||||||||||||||||||| ||| |||||||||||||| || || ||
Sbjct 2323 ACATGTGGGAAGTAGTGAGCAAAGTGTGGGTTGAGTTGCTTTGCTATGCATCA-CTTCAT 2381
Query 2277 TGTGATTCTAAACAACATGCAGCTCAGCTCAACAAAGGTGGTGAA-TTGATCAACTTTGT 2335
||||| ||| || ||||||| |||| || | |||||| |||||| || |||||||||||
Sbjct 2382 TGTGACTCTCAAGAACATGCTTCTCAACTTAGCAAAGGCGGTGAACTT-ATCAACTTTGT 2440
Query 2336 TTGGCT-TCTGATGGCTCATTTCGGACTCGGAGAGCAATTCCTGACCACCA-AGGAAGAT 2393
|||||| | | ||||||||||| ||||||||||| ||||||| | || || || | |||
Sbjct 2441 TTGGCTAT-TAATGGCTCATTTTGGACTCGGAGATCAATTCCAAATCAACAGAG-ATGAT 2498
Query 2394 TCTAGAGCCAGACT 2407
| ||||||| |||
Sbjct 2499 GCAAGAGCCAAACT 2512
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150199827342
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5