BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946272
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19038.1 | Symbols: LCR15 | low-molecular-weight cysteine-ri... 272 1e-72
AT4G19035.1 | Symbols: LCR7 | low-molecular-weight cysteine-ric... 191 3e-48
> AT4G19038.1 | Symbols: LCR15 | low-molecular-weight cysteine-rich
15 | chr4:10430009-10430998 REVERSE LENGTH=359
Length=359
Score = 272 bits (147), Expect = 1e-72
Identities = 243/288 (84%), Gaps = 11/288 (4%)
Strand=Plus/Plus
Query 4 GCTTGCAATATCGGGACATGAGTAAATCCTTGCAACTCATTGTCACCGTTCTATGTATTT 63
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 23 GCTTGCAGCATCGGGACATGAGTAAATCCTTGCAACTCATTGTCACCGTTCTATGTATCT 82
Query 64 TCACCATCCTCGTTCTAGGGGAGATAGGGATGGCAAAGGGACAGCCACTGGAGAAAA-GG 122
|||||||||||||||||||||||||| | ||||||||||||| ||||| ||| ||| ||
Sbjct 83 TCACCATCCTCGTTCTAGGGGAGATATGTCTGGCAAAGGGACAACCACTTGAGGAAATGG 142
Query 123 T-G--TG-ATG-AGATCCTAACACGGGGAGAATGTGAACT-CGACAAATGTGCCTTTGCA 176
| | || | | || ||||| | || ||||||| || | |||| |||||||||||||
Sbjct 143 TAGAGTGTAAGGAGGTCCTATGGCCGGAAGAATGTAAA-TACGACGCATGTGCCTTTGCA 201
Query 177 TGTGCACTCAAGAGACATGGCAAGGGTGGTTGCATTGAAGAAGCCCACGATCCTCGCCCC 236
||||||||||||||||||||||||||||||||| | |||| |||| |||| |||| ||
Sbjct 202 TGTGCACTCAAGAGACATGGCAAGGGTGGTTGCCTCGAAG--GCCC-CGATTATCGCTCC 258
Query 237 AATTGCGTTTGCAATTATACTTGCTAACGCTCTTAATATTTGTACTTC 284
|||| | ||| | ||| ||||| ||||||||||||| ||||| |||
Sbjct 259 GCTTGCATCTGCCAGTATGCTTGCAAACGCTCTTAATACTTGTATTTC 306
> AT4G19035.1 | Symbols: LCR7 | low-molecular-weight cysteine-rich
7 | chr4:10427807-10428516 REVERSE LENGTH=255
Length=255
Score = 191 bits (103), Expect = 3e-48
Identities = 169/199 (85%), Gaps = 11/199 (6%)
Strand=Plus/Plus
Query 81 GGGGAGATAGGGATGGCAAAGGGACAGCCACT--GG---A-GAAAAGGTGTGATGAGATC 134
||||||||| |||||||||||||||| ||| | || | | |||||||| |||| ||
Sbjct 61 GGGGAGATAAGGATGGCAAAGGGACAACCATTGGGGACAATGGAAAGGTGTTATGATATG 120
Query 135 CTAACACGGGGAGAATGTG-AACTCGACAAATGTGCCTTTGCATGTGCACTCAAGAGACA 193
|||||| |||||||||||| | || ||||| ||||||||| |||||||||||||||||||
Sbjct 121 CTAACATGGGGAGAATGTGTACCT-GACAACTGTGCCTTTTCATGTGCACTCAAGAGACA 179
Query 194 TGGCAAGGGTGGTTGCATTGAAGAAGCCCACGATCCTCGCCCCAATTGCGTTTGCAATTA 253
||||||||||||||||||| ||| ||| ||||| |||||| |||||||||| ||||
Sbjct 180 TGGCAAGGGTGGTTGCATT-AAG--GCCTACGATAATCGCCCTGCTTGCGTTTGCTATTA 236
Query 254 TACTTGCTAACGCTCTTAA 272
|||||||| ||||||||||
Sbjct 237 TACTTGCTTACGCTCTTAA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13069614740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5