BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946280
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19006.1 | Symbols: | Proteasome component (PCI) domain pro... 1982 0.0
AT5G45620.1 | Symbols: | Proteasome component (PCI) domain pro... 1358 0.0
> AT4G19006.1 | Symbols: | Proteasome component (PCI) domain protein
| chr4:10409183-10411465 REVERSE LENGTH=1445
Length=1445
Score = 1982 bits (1073), Expect = 0.0
Identities = 1157/1199 (96%), Gaps = 0/1199 (0%)
Strand=Plus/Plus
Query 1 TGTTTCTTCGAGAATCTGCCATGGCTGCTCTACAGTACCTTGAATCGCAGAAAAATGCGC 60
||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 99 TGTTTCTTCGAAAATCTACCATGGCTGCTCTACAATACCTTGAATCGCAGAAAAATGCGC 158
Query 61 ACCCAGAGCTTGGCGAGTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTTTGGC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 159 ACCCAGAGCTTGGTGAGTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTCTGGC 218
Query 121 ATCAGCTCACTCTTAAGCTCGAGCAGTTCATTGCTCTCTCTGTCTTTCAGGCTGGAGATG 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 219 ATCAGCTCACTCTTAAGCTCGAGCAGTTCATCGCTCTCTCTGTCTTTCAGGCTGGAGATG 278
Query 181 CTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAACCTTCTGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 279 CTTTAATACAGCTTTACAACAATTTCATCACTGACTTTGAGACGAGGATCAATCTTCTGA 338
Query 241 AGCTTGCGCATTTCGCGGTTGTAGTCTCCCGGCAGTACCCTGAGAAAGAAGCTGCGGTTA 300
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct 339 AGCTTGCGCATTTCGCTGTTGTAGTCTCCCGACAGTATCCTGAGAAAGAAGCTGCAGTTA 398
Query 301 GTTATCTTGAAGGAGTGATTGAAAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAGC 360
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 399 GTTATCTTGAAGGAGTGATTGAGAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAAC 458
Query 361 CAATTAGCTATATAGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 459 CAATTAGCTATATAGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGG 518
Query 421 AATGCAAGAAAATCTTGGACGATGGAAAAAGCTTGCTTGATAGTATGACTGACATTGATC 480
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 519 AGTGCAAGAAAATCTTGGACGATGGAAAAAGCCTGCTTGATAGTATGACTGACATTGATC 578
Query 481 CATCAGTCTATGCCAACTTCTTTTGGGTGTCTTCTCAGTACCATAAATTCCGTCAAGAGT 540
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 579 CATCAGTTTATGCCAACTTCTTTTGGGTCTCTTCTCAGTACCATAAAGTCCGTCAAGAGT 638
Query 541 TTTCTGAGTTCTATAAAAATGCTCTTCTTTACCTTGCTTATACGTCTGTGGAGTCACTCT 600
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 639 TCTCTGAGTTCTATAAAAATGCTCTTCTTTACCTCGCTTATACGTCTGTGGACTCACTCT 698
Query 601 CGGAATCATTCAAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGAGATA 660
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 699 CGGAATCATTTAAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGGGAGA 758
Query 661 ATATCTATAACTTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 ATATCTATAACTTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAA 818
Query 721 ATGTGGAATGGCTTTACCACATTCTACAAGCATTCAACCATGGTGATTTAGTTCAGTATC 780
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 819 ATGTGGAATGGCTTTACCACATTCTACAAGCATTCAACCACGGAGATTTAGTTCAGTACC 878
Query 781 AAGAACTCTGTCGTGTGCACAACGCATCATTGAGTGCTCAACCCGCACTGGTTGAGAATG 840
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 879 AAGAACTCTGTCGTGTGCACAATGCATCGTTGAGTGCTCAACCAGCACTGGTTGAGAATG 938
Query 841 AGAAGAAACTATTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGAC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 939 AGAAGAAACTATTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGAC 998
Query 901 CTGCTGAAGATAGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 CTGCTGAAGATAGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCG 1058
Query 961 AAGATGTTGAACACCTTCTCATGAAGAGCTTATCTGTGCACTTGATAGAGGGAATATTAG 1020
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1059 AAGATGTTGAGCACCTTCTCATGAAGAGCTTATCGGTGCACTTGATAGAGGGAATACTAG 1118
Query 1021 ATCAGGTGAATGGAACAGTATACATCTCATGGGCGCAACCGAGGGTGTTAGGGATTCCGC 1080
||||||||||||||||||| ||| |||||||||||||||||||||||||||| || ||||
Sbjct 1119 ATCAGGTGAATGGAACAGTTTACGTCTCATGGGCGCAACCGAGGGTGTTAGGAATACCGC 1178
Query 1081 AGATCAAGTTATTGAGGGATCAGCTAGACAGTTGGGTCGATAAGGTTCACACTACATTGT 1140
||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1179 AGATCAAGTCATTGAGGGATCAGCTAGACAGCTGGGTCGATAAGGTTCACACCACATTGT 1238
Query 1141 TATCTGTTGAGGCCGAGACACCTGATCTTGTTGCAGCTTAAACCCTTGTTTCCTCTTTT 1199
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1239 TATCTGTTGAGGCCGAGACACCTGATCTTGTTGCAGCTTAAACTCTTCTTTCCTCTTTT 1297
> AT5G45620.1 | Symbols: | Proteasome component (PCI) domain protein
| chr5:18501486-18504117 FORWARD LENGTH=1514
Length=1514
Score = 1358 bits (735), Expect = 0.0
Identities = 1030/1173 (88%), Gaps = 18/1173 (2%)
Strand=Plus/Plus
Query 18 GCCATGGCTGCTCTACAGTACCTT-GAATCGCAGAAAAATGCGCACCCAGAGCTTGGCGA 76
||||||||||||||||| || ||| ||||| | ||||||| |||| |||||||| |||||
Sbjct 102 GCCATGGCTGCTCTACAATA-CTTGGAATCTCTGAAAAATACGCATCCAGAGCTCGGCGA 160
Query 77 GTGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACTCTTAA 136
||||||||||| || ||||||||||| ||||| ||||| |||||||| ||||| |||||
Sbjct 161 ATGGTACAATTCCCTTGCAGATCTGTATCAGAAAAAGCTCTGGCATCAACTCACCCTTAA 220
Query 137 GCTCGAGCAGTTCATTGCTCTCTCTGTCTTTCAGGCTGGAGATGCTTTAATACAGCTT-T 195
|||||| |||||||| |||||| |||||||||||||||| |||||||| || ||| || |
Sbjct 221 GCTCGAACAGTTCATCGCTCTCGCTGTCTTTCAGGCTGGTGATGCTTTGATTCAG-TTCT 279
Query 196 A-CAACAATTTCATCACTGACTTTGAGACGAGGATCAACCTTCTGAAGCTTGCGCATTTC 254
| | ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 280 ATC-ACAATTTCATCACTGACTTTGAGACGAAGATCAATCTTCTGAAGCTTGCGCATTTT 338
Query 255 GCGGTTGTAGTCTCCCGGCAGTACCCTGAGAAAGAAGCTGCGGTTAGTTATCTTGAAGGA 314
|| || || ||||| || |||||| |||||||||||||||| ||||| ||||||||| |
Sbjct 339 GCTGTGGTGGTCTCTCGACAGTACTCTGAGAAAGAAGCTGCAGTTAGCTATCTTGAAAGC 398
Query 315 GTGATTGA-AAAGCTTAAAGCTACTAAAGAGTCAAGGATAAATGAGCCAATTAGCTATAT 373
|||||||| ||| |||| ||||||||||||| | ||||| | ||| ||||| | |||||
Sbjct 399 GTGATTGAGAAA-CTTAGAGCTACTAAAGAGCCTAGGATTACTGAACCAATCATTTATAT 457
Query 374 AGAAACACAAATAGCTTTGTTCAAGCTTGAGCAAGGTGACCAGAAGGAATGCAAGAAAAT 433
|||||||||| |||||| |||||||||||||||||||| |||||||| ||||| |||||
Sbjct 458 TGAAACACAAAAAGCTTTATTCAAGCTTGAGCAAGGTGATCAGAAGGAGTGCAAAAAAAT 517
Query 434 CTTGGACGATGGAAAAAGCT-TGCTTGATAGTATGACTGACATTGATCCATCAGTCTATG 492
||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||
Sbjct 518 CTTGGACGATGGAAAGAGCTCT-CTTGATAGTATGACTGACATTGATCCATCAGTCTATG 576
Query 493 CCAACTTCTTTTGGGTGTCTTCTCAGTACCATAAATTCCGTCAAGAGTTTTCTGAGTTCT 552
||||||||| |||||||||||||||||||||||| | ||||||||| |||||||| ||||
Sbjct 577 CCAACTTCTATTGGGTGTCTTCTCAGTACCATAAGTGCCGTCAAGAATTTTCTGATTTCT 636
Query 553 ATAAAAATGCTCTTCTTTACCTTGCTTATACGTCTGTGGAGTCAC-TCTCGGAATCATTC 611
| |||| |||||| ||||| ||||| || |||||||||||| || | || ||||| ||
Sbjct 637 ACAAAAGTGCTCTGCTTTATCTTGCATACACGTCTGTGGAGG-ACCTTTCAGAATCGTTT 695
Query 612 AAGCTGGATTTGGCTTTTGATTTGTCGCTTTCAGCTCTACTTGGAGATAATATCTATAAC 671
||||||||||||||||| |||||||| || |||||||||||||| || || |||||||||
Sbjct 696 AAGCTGGATTTGGCTTTCGATTTGTCACTATCAGCTCTACTTGGGGAGAACATCTATAAC 755
Query 672 TTTGGGGAACTGTTAGCCCATCCAATTTTGAAAAGTCTGCTTGGAACAAATGTGGAATGG 731
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 756 TTTGGGGAACTGTTAGCCCATCCCATTTTGAAAAGTCTCCTTGGAACAAATGTGGAATGG 815
Query 732 CTTTACCACATTCTACAAGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTCTGT 791
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 816 CTCTACCACATTCTACAGGCATTCAACCATGGTGATTTAGTTCAGTATCAAGAACTATGC 875
Query 792 CGTGTGCACAACGCATCATTGAGTGCTCAACCCGCACTGGTTGAGAATGAGAAGAAACTA 851
||||||||||||||||| |||| ||||||||| ||||| |||||||| |||||||| ||
Sbjct 876 CGTGTGCACAACGCATCCTTGATTGCTCAACCAGCACTTGTTGAGAACGAGAAGAAGCTT 935
Query 852 TTAGAGAAGATCAACATTCTCTGCCTTATTGAGATCATTTTCAGCCGACCTGCTGAAGAT 911
|| || ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||
Sbjct 936 TTGGAAAAGATCAACATTCTCTGCCTTATCGAGATCATCTTCAGCCGACCCGCTGAAGAT 995
Query 912 AGGACCATACCTTTGAGTGTCATTGCCGAGCGTACTAAACTTTCAATCGAAGATGTTGAA 971
|| ||||| |||||||| |||| || ||||||||||||||||| || |||||||||||
Sbjct 996 AGAACCATTCCTTTGAGCATCATCGCTGAGCGTACTAAACTTTCCATTGAAGATGTTGAG 1055
Query 972 CACCTTCTCATGAAGAGC-TTATCTGTGCACTTGATAGAGGGAAT-ATTAGATCAGGTGA 1029
|||||||||||||||||| || |||||||| ||||| ||||| || || ||| || ||||
Sbjct 1056 CACCTTCTCATGAAGAGCCTT-TCTGTGCATTTGATCGAGGGCATCAT-AGACCAAGTGA 1113
Query 1030 ATGGAACAGTATACATCTCATGGGCGCAACCGAGGGTGTTAGGGATTCCGCAGATCAAGT 1089
| |||||| | || ||||||||||||||||||| || |||||||||| |||||||||
Sbjct 1114 ACGGAACAATTTATGTCTCATGGGCGCAACCGAGAGTACTAGGGATTCCACAGATCAAGG 1173
Query 1090 -TATTGAGGGATCAGCTAGACAGTTGGGTCGATAAGGTTCACACTACATTGTTATCTGTT 1148
| ||||||||||| ||||||||||||| || || |||||||| || || ||||||||
Sbjct 1174 CT-TTGAGGGATCAATTAGACAGTTGGGTTGACAAAGTTCACACCACTTTACTATCTGTT 1232
Query 1149 GAGGCCGAGACACCTGATCTTGTTGCAGCTTAA 1181
|| ||||||||||| |||||||||||||| |||
Sbjct 1233 GAAGCCGAGACACCAGATCTTGTTGCAGCATAA 1265
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5