BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946285
Length=895
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18975.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1240 0.0
> AT4G18975.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:10391965-10393700 REVERSE LENGTH=1104
Length=1104
Score = 1240 bits (671), Expect = 0.0
Identities = 830/905 (92%), Gaps = 17/905 (2%)
Strand=Plus/Plus
Query 4 TACTGGAAGTGACAGTAATGGCGCTCTGTAACTTCAATCCAACTC-TCGTAGGATTCACG 62
|||||||||||| ||||||||||||||||||||| |||||||||| | | |||| |
Sbjct 19 TACTGGAAGTGAAAGTAATGGCGCTCTGTAACTTGAATCCAACTCAAGGGA-TATTCCCA 77
Query 63 TTTCAAGGATTATCAAAACCTCAAGAATTTGGATGCTTTTCGTTGCTTGAATATCCAAGT 122
|| ||||| ||||||||| ||||||||||| ||||||||| |||||| ||| |||| ||
Sbjct 78 TTGCAAGGCTTATCAAAATCTCAAGAATTTATATGCTTTTCTTTGCTTCAATCTCCACGT 137
Query 123 TGTGGAAGTTACTCCAAGTTGAAGACGGAAAGGTTTGGTTTTTGCATCAGGGCAAAGTTC 182
|| |||||||||||| |||||||||| |||||||||| ||||||||||| ||||||||
Sbjct 138 TGCGGAAGTTACTCCTCGTTGAAGACGAAAAGGTTTGGCTTTTGCATCAGATCAAAGTTC 197
Query 183 TCAGAGAAGCAAGCCGGGAAATT-------GG--ATGTAGCCACTGTGAACAGCAAGGAA 233
||||||||| |||| |||||||| || |||| |||||||||||||||||||||
Sbjct 198 TCAGAGAAGGAAGCTGGGAAATTGGACAGAGGTTATGTTGCCACTGTGAACAGCAAGGAA 257
Query 234 ATAAAGAAAGTGGGGAAGAAAGAGCATCACTTATGGAAGAAGAATGACTCTGCTGGGTCT 293
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 258 ATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCT 317
Query 294 GGACAGAAAGCACTTAAT-TTAGTCCGAATGCTCTCTGGACTCCCAAATGAAAAAGAGGC 352
|||||||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 318 GGACAGAAAGCACTTAATCTT-GTTCGAATGCTCTCTGGACTCCCAAATGAAAAAGAGGC 376
Query 353 TGTTTATGGAGCTTTAAACAAATGGGTAGCTTGGGAGGTTGAATTTCCCATTATTGCTGC 412
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 377 TGTTTATGGAGCTTTGAATAAATGGGTAGCTTGGGAGGTTGAATTTCCCATTATTGCTGC 436
Query 413 AGCTAAGGCTTTGCAAATCTTAAGAAAGAGAAGCCAGTGGCATCGTCTGATTCAATTGGC 472
||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 437 AGCTAAGGCGTTGCAAATCTTAAGAAAGAGAAGTCAGTGGCATCGTGTGATTCAATTGGC 496
Query 473 TAAGTGGATGTTAAGCAAAGGGCAAGGTGCTACAATGGGAACATATGATACCCTCTTATT 532
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 497 TAAGTGGATGTTAAGCAAAGGGCAAGGTGCTACAATGGGAACATACGATATCCTCTTATT 556
Query 533 GGCATTTGATATGGACCAAAGAGCTGACGAGGCAGAATCGTTATGGAACATGATTCTGCA 592
|||||||||||||||| |||| ||||| |||||||| || ||||||||||||||||||||
Sbjct 557 GGCATTTGATATGGACGAAAGGGCTGATGAGGCAGAGTCCTTATGGAACATGATTCTGCA 616
Query 593 CACACATACACGATCCATCCCAAGACGCTTGTTCGCTAGGATGATAGCTTTGTATGCTCA 652
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 617 CACACATACACGATCCATCCCAAGACGCTTGTTCGCTAGGATGATAGCGTTGTATGCTCA 676
Query 653 CTATGACCTTCACGATAAGGTTATCGAGGTGTTTGCAGACATGGAGGAGCTGAAGGTGAG 712
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 677 CCATGACCTTCACGATAAGGTTATCGAGGTCTTTGCAGACATGGAAGAGCTGAAGGTGAG 736
Query 713 GCCAGATGAAGA-TACTGCGAGGAGAGTGGCTCGAGCCTTCAGGGAACTCGGCCAAGAAG 771
||||| ||||| | |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 737 CCCAGACGAAGACT-CTGCGAGGAGAGTGGCACGAGCCTTCAGGGAACTCAACCAAGAAG 795
Query 772 AAAATAGGAAACTGATCCTTAGGAGGTACCTCTCTGAATTCAAATACATCTACTTCAATG 831
||||| | |||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 796 AAAATCGAAAACTGATCCTTAGAAGGTACCTCTCTGAATACAAATACATCTACTTCAATG 855
Query 832 GTGAAAGGGTTAGAGTCAAAAGATATTCCTCTGAAGATAGTTGATTTCATT-TTCATTAA 890
|||| ||||||||||||||||||||| ||||||||||||||||||||||| || || ||
Sbjct 856 GTGAGCGGGTTAGAGTCAAAAGATATTTCTCTGAAGATAGTTGATTTCATTCTT-ATGAA 914
Query 891 CACAC 895
|||||
Sbjct 915 CACAC 919
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43703707890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5