BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946287
Length=950
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18960.1 | Symbols: AG | K-box region and MADS-box transcrip... 1515 0.0
AT5G13790.1 | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449014-4... 82.4 7e-15
> AT4G18960.1 | Symbols: AG | K-box region and MADS-box transcription
factor family protein | chr4:10382856-10388539 FORWARD
LENGTH=1532
Length=1532
Score = 1515 bits (820), Expect = 0.0
Identities = 856/874 (98%), Gaps = 0/874 (0%)
Strand=Plus/Plus
Query 57 GCACAACCTTACCTTCCATTTTCTGCAACTTCTCCAAATCTCATACTTTCCAGAAAATCA 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 GCACAACCTTACCTTCCATTTTCTGCAACTTCTCCAAATCTCATACTTTCCAGAAAATCA 451
Query 117 TTTTCCCAAGAAAAATAAAACTTTCCCCTTTGTTCTTCTCCCCCCAACAGCAATCACGGC 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 TTTTCCCAAGAAAAATAAAACTTTCCCCTTTGTTCTTCTCCCCCCAACAGCAATCACGGC 511
Query 177 GTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGAT 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GTACCAATCGGAGCTAGGAGGAGATTCCTCTCCCTTGAGGAAATCTGGGAGAGGAAAGAT 571
Query 237 CGAAATCAAACGGATCGAGAACACAACGAATCGTCAAGTTACTTTTTGCAAACGTAGAAA 296
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 572 CGAAATCAAACGGATCGAGAACACAACGAATCGTCAAGTCACTTTTTGCAAACGTAGAAA 631
Query 297 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 691
Query 357 CGTCTTCTCTAGCCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACAAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 692 CGTCTTCTCTAGCCGTGGTCGTCTCTATGAGTACTCTAACAACAGTGTAAAAGGGACTAT 751
Query 417 TGAGAGGTACAAGAAGGCAATCTCAGATAATTCTAACACCGGATCGGTGGCAGAAATTAA 476
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 752 TGAGAGGTACAAGAAGGCAATATCGGACAATTCTAACACCGGATCGGTGGCAGAAATTAA 811
Query 477 TGCACAGTATTATCAACAAGAATCGGCCAAATTGCGTCAACAAATTATCAGCATACAAAA 536
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 812 TGCACAGTATTATCAACAAGAATCAGCCAAATTGCGTCAACAAATAATCAGCATACAAAA 871
Query 537 TTCCAACAGGCAATTGATGGGTGAGACGATAGGGTCAATGTCTCCCAAAGAGCTCAGGAA 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CTCCAACAGGCAATTGATGGGTGAGACGATAGGGTCAATGTCTCCCAAAGAGCTCAGGAA 931
Query 597 TTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCAT 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 932 CTTGGAAGGCAGATTAGAGAGAAGTATTACCCGAATCCGATCCAAGAAGAATGAGCTCTT 991
Query 657 ATTTTCAGAAATCGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGCT 716
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 992 ATTTTCTGAAATCGACTACATGCAGAAAAGAGAAGTTGATTTGCATAACGATAACCAGAT 1051
Query 717 TCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTGATGCCAGG 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1052 TCTTCGTGCAAAGATAGCTGAAAATGAGAGGAACAATCCGAGTATAAGTCTAATGCCAGG 1111
Query 777 AGGATCTAACTACGAGCAGATTATGCCACCGCCTCAAACGCAATCTCAACCGTTTGATTC 836
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 1112 AGGATCTAACTACGAGCAGCTTATGCCACCACCTCAAACGCAATCTCAACCGTTTGATTC 1171
Query 837 ACGGAATTATTTCCAAGTCGCGGCATTGCAACCTAACAACCACCATTACTCATCCGCGGG 896
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1172 ACGGAATTATTTCCAAGTCGCGGCATTGCAACCTAACAATCACCATTACTCATCCGCGGG 1231
Query 897 TCGCCAAGACCAAACTGCTCTTCAGTTAGTGTAA 930
||||||||||||||| ||||| ||||||||||||
Sbjct 1232 TCGCCAAGACCAAACCGCTCTCCAGTTAGTGTAA 1265
> AT5G13790.1 | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449014-4450843
REVERSE LENGTH=962
Length=962
Score = 82.4 bits (44), Expect = 7e-15
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 297 TGGTTTGCTCAAGAAAGCTTACGAGCTCTCTGTTCTTTGTGATGCTGAAGTCGCACTCAT 356
||| || || ||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 119 TGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTGTGATGCTGAAGTTGCTGTCAT 178
Query 357 CGTCTTCTCTA 367
|||||||||||
Sbjct 179 CGTCTTCTCTA 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46466585975
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5