BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946293
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18900.1 | Symbols: | Transducin/WD40 repeat-like superfami... 841 0.0
AT4G18905.2 | Symbols: | Transducin/WD40 repeat-like superfami... 610 1e-173
AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfami... 355 6e-97
> AT4G18900.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:10356465-10359078 FORWARD LENGTH=1386
Length=1386
Score = 841 bits (455), Expect = 0.0
Identities = 629/711 (88%), Gaps = 20/711 (3%)
Strand=Plus/Plus
Query 718 AAGGTAGCCATACTAAG-TCAGTTATTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATA 776
|||||||||| ||| || |||||| |||||||||||||||| ||||||||||||||||||
Sbjct 686 AAGGTAGCCACACT-AGATCAGTTCTTGGTCTTGCTTGGAATAAGGAGTTTCGGAATATA 744
Query 777 CTTGCTAGTGGC-AGTGTCGACAAACAAGTTAAAGTTTGGGATGTTGCTACTGAAACATG 835
||||||||| || |||| ||||||| ||||||| || |||||||| ||||||| ||| ||
Sbjct 745 CTTGCTAGT-GCTAGTGCCGACAAAAAAGTTAAGGTATGGGATGTGGCTACTGGAACGTG 803
Query 836 CCAGATTACTCTGGAGCATCACACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGC 895
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 804 TAAGATTACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGAACCATTATGC 863
Query 896 TCCGGAAGTACTTCTTAGTGGGTCATTTGATCGCACTGTTGTATTGAAAGATGTAAGA-A 954
||| ||||| ||||| |||||||| ||||||| ||||||||||||||||| | |||| |
Sbjct 864 TCCAGAAGTGCTTCTCAGTGGGTCCTTTGATCAAACTGTTGTATTGAAAGACGGAAGACA 923
Query 955 AGCCTTCACACTCGGGTTTCAAATGGTCAGTCATTTCCAAAGTTGAAAGCTTAGCCTGGG 1014
| |||||||||||||||||||||||||| ||||| ||| | |||||||||||||||||||
Sbjct 924 A-CCTTCACACTCGGGTTTCAAATGGTCTGTCATGTCCGATGTTGAAAGCTTAGCCTGGG 982
Query 1015 ATCCACATAGCGAATACTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTG 1074
|||| ||||| ||| |||||||| |||| |||||| ||||||||||||| ||||| ||||
Sbjct 983 ATCCTCATAGTGAACACTCCTTTGTGGTAAGTCTCGAAGATGGAACTGTCAAGGGCTTTG 1042
Query 1075 ATGTTCGTCAAGCCTCAACTTCAACCTCTGATTCAAATCCAAGTTTCACTCTCCAACATG 1134
|||| ||||||||||| | |||| ||||||| ||||||||||| |||||| | | |||
Sbjct 1043 ATGTACGTCAAGCCTCCATTTCAGCCTCTGAATCAAATCCAAGCTTCACTAT--TA-ATG 1099
Query 1135 GACGT-A--AAGCAGTC-ACTTCCATCTCATACAACGTTTCTGCACCTAATCTTTTGGCA 1190
||| | | |||||| | |||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 1100 GACATGACGAAGCAG-CTACTTCCGTCTCATACAACATTTCGGCACCTAATCTTTTGGCA 1158
Query 1191 ACTGGATCTACGGATCA-ATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCATG 1249
|| ||||||| |||| | | ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1159 ACGGGATCTAAGGAT-AGAACGGTAAAGCTTTGGGATCTTTCAAACAATGAGCCTTCATG 1217
Query 1250 CATTGCTACACACCGA-CCAAATGCTGGACGCTTATT-TTCCATTGCCTTCTCTACGGAC 1307
|||||||||||| | | |||||||||||| ||||||| || |||||| |||||| |||||
Sbjct 1218 CATTGCTACACA-CAATCCAAATGCTGGAGGCTTATTCTT-CATTGCTTTCTCTCCGGAC 1275
Query 1308 AATCCTTTCTTACTCGCTATGGGTGGCCTTATGGGCAAGTTAAAAGTTTGGGATATACTT 1367
||||||||||||||||||||||||||| | ||||| |||||||| ||||||||| ||||
Sbjct 1276 AATCCTTTCTTACTCGCTATGGGTGGCGTAATGGGGGAGTTAAAACTTTGGGATACACTT 1335
Query 1368 TCGGACACTAATGTCTCCAGCAGATACGGAAGCAGACAAGTCCGACCATGA 1418
|||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1336 TCGGACACTAATGTCTCCAGCAGATACGGAAGCAGAGAAGTCCGACCGTGA 1386
Score = 246 bits (133), Expect = 4e-64
Identities = 219/257 (85%), Gaps = 19/257 (7%)
Strand=Plus/Plus
Query 82 AACTTCCTTCTAAGGAGGAAATCGAAAAGCTCGAAGAGAGTTGTGAAT-TTTACAGCGAG 140
||||||||||||||||||||||||||| || | |||| |||||| ||| ||| ||| |
Sbjct 14 AACTTCCTTCTAAGGAGGAAATCGAAATGCACAAAGACAGTTGTAAATATTT-CAGTAAT 72
Query 141 GAT---GAAGAAGAAGAAACCGATGATGAAGAAGAGAATGGTGATGTTGCTCATGCAAAA 197
||| ||||||||||| ||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 73 GATACAGAAGAAGAAGAGACCGAGGATGAAGAAGAGAATGGTGAAGTTGCTCATGCGAAA 132
Query 198 GCAATAGCGA-AAGAATTTGGAAAATCTTCCAAAAGCAAGAATGcttcttcttcttcttc 256
|| |||| | |||| ||||||||||| |||||||||||||||| | ||||||
Sbjct 133 GCCGTAGC-AGAAGAGTTTGGAAAATCATCCAAAAGCAAGAATG--------T-TTCTTC 182
Query 257 ttcAATGGAG---GTTGATGAGGTAGCTGATGGTTTGAAAGAACTTGACATGGATAATTA 313
|||||||||| | ||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 183 TTCAATGGAGCTTGATGATGAGGTAGCTGAGGGTTTGAAAGAACTCGACATGGATAATTA 242
Query 314 CGATGAAGAGGATGATG 330
|||||||||||||||||
Sbjct 243 CGATGAAGAGGATGATG 259
Score = 163 bits (88), Expect = 4e-39
Identities = 186/232 (80%), Gaps = 12/232 (5%)
Strand=Plus/Plus
Query 400 TTTATGTATGCGAGGAGACATCTAATGGCTCTCCAAACATCTATAGTCATCAGGA-A-AT 457
||||||||| |||||| ||||| |||| |||||||| || |||| |||||| | | |
Sbjct 440 TTTATGTATCCGAGGACACATCCCATGGTTCTCCAAATATGTATAATCATCATTACAGA- 498
Query 458 ATTGCTACCA-AAACCTCCAATGTGTACTGCTTGGCTTGATTGTCCACTTAAAGGAGGAG 516
||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 499 ATT-ATACCAGCAA-TTCCATTGTGTACTGCTTGGCTTGATTGTCCACTTAAAGGAGGAG 556
Query 517 AAAAAGGGAATTTTGTAGCGGTTGGTTTGTTTAAAACGC-ACGCAATAGAGATATGGGAT 575
||| ||||||||| |||| ||||||| | | |||| | |||||||||||||||||
Sbjct 557 AAAGAGGGAATTTCCTAGCTGTTGGTTCGGATGGGACGCCAA-CAATAGAGATATGGGAT 615
Query 576 CTTGACATTATGCG--CGAGTTGTTACCCTGCGTACAACTAGGAGGAAAAAA 625
||||| | || | ||| || |||| || ||||||||||||||| ||||
Sbjct 616 CTTGATGCT-TG-GTTCGACATGCTACCTTGTGTACAACTAGGAGGACAAAA 665
> AT4G18905.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:10359896-10363240 FORWARD LENGTH=1925
Length=1925
Score = 610 bits (330), Expect = 1e-173
Identities = 582/699 (83%), Gaps = 35/699 (5%)
Strand=Plus/Plus
Query 725 CCATACTAAGTCAGTTA-TTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATACTTGCTA 783
||||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 980 CCATACTGAGTCAG-TACTTGGTCTTGCTTGGAACAAGGAGTTTCGGAACATACTTGCTA 1038
Query 784 GTGGC-AGTGTCGACAAACAAGTTAAAGTTTGGGATGTTGCTACTGAAACATGCCAGATT 842
|| || |||| ||||||| ||||||| || |||||||| ||||||| || || |||||
Sbjct 1039 GT-GCTAGTGCCGACAAAAAAGTTAAGGTCTGGGATGTGGCTACTGGGACGTGTAAGATT 1097
Query 843 ACTCTGGAGCATCACACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCGGAA 902
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 1098 ACTATGGAGCATCACACAAAGGAGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCAGAA 1157
Query 903 GTACTTCTTAGTGGGTCATTTGATCGCACTGTTGT-ATTGAAAGATGTAAGA-AAGCCTT 960
|| ||||| |||||||| ||||||| |||||||| || |||||| | |||| || ||||
Sbjct 1158 GTGCTTCTCAGTGGGTCGTTTGATCAAACTGTTGTCAT-GAAAGACGGAAGACAA-CCTT 1215
Query 961 CACACTCGGGTTTCAAATGGTCAGTCATTTCCAAAGTTGAAAGCTTAGCCTGGGATCCAC 1020
|||||||||||||||||||||| ||||| || | || |||||||||||||||||||| |
Sbjct 1216 CACACTCGGGTTTCAAATGGTCTGTCATGTCTGATGTCGAAAGCTTAGCCTGGGATCCTC 1275
Query 1021 ATAGCGAATACTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTGATGTTC 1080
|| ||||| |||||||| |||| ||||| |||||||||| ||||||||||||||| | |
Sbjct 1276 ATTGCGAACACTCCTTTGTGGTAAGTCTTGAAGATGGAACCGTGAAGGGTTTTGATATAC 1335
Query 1081 GT-CAAGC-C--TCAACTTCA-ACCTCTGATTCAAATCCAAGTTTCACTCTCCAA-CA-- 1132
|| | || | ||| |||| | ||||||| ||| |||| || |||| ||||| ||
Sbjct 1336 GTGCT-GCACAGTCAGGTTCAGAT-TCTGATTTAAACCCAACTTACACTATCCAAGCACA 1393
Query 1133 TGGAC--GTA-A-AGCAGTCACTTCCATCTCATACAACGTTTCTGCACCTAATCTTTTGG 1188
|| | | | | || |||| | ||||||||||||||| ||||| |||| ||||||||||
Sbjct 1394 TGCCCAAG-ACAGAGGAGTCTCCTCCATCTCATACAACATTTCTACACCCAATCTTTTGG 1452
Query 1189 CAACTGGATCTACGGATCAATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCAT 1248
| || || |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 CTACGGGGTCTATGGATAAATCGGTAAAGCTTTGGGATCTTTCAAACAATGAACCTTCAT 1512
Query 1249 GCATTGCTACACACCGACCAAATGCTGGACGCT-TATTTTCCATTGCCTTCT-CTACGGA 1306
||||||||||||||| ||||||||||||| ||| | ||||||||| |||| | | |||
Sbjct 1513 GCATTGCTACACACCAACCAAATGCTGGA-GCTGTGTTTTCCATTTCCTT-TGCGGTGGA 1570
Query 1307 CAATCCTTTCTTACTCGCTATGGGTGGC-CTTATGGGCA-AGTTAAAAGTTTGGGATATA 1364
||| |||||||| || ||||| |||||| | | ||| | || || | |||||||||| |
Sbjct 1571 CAACCCTTTCTTGCTTGCTATTGGTGGCTCAAA-GGG-AGAGCTACATGTTTGGGATACA 1628
Query 1365 CT-TTCGGACACTAATGTCTC-CAGCAGATACGGAAGCA 1401
|| || ||| |||||||| | | ||| ||| || ||||
Sbjct 1629 CTGTT-GGATGCTAATGTCGCTC-GCAAATATGGGAGCA 1665
> AT4G35370.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:16815138-16817544 FORWARD LENGTH=1342
Length=1342
Score = 355 bits (192), Expect = 6e-97
Identities = 531/687 (77%), Gaps = 54/687 (8%)
Strand=Plus/Plus
Query 736 CAGTTATTGGTCTTGCTTGGAACAAGGAGTTTCGGAATATACTTGCTAGTGGCAGTGTCG 795
|||| |||| ||||||||||||||||||||||||||||||| |||||||||| |||| |
Sbjct 653 CAGTAATTGATCTTGCTTGGAACAAGGAGTTTCGGAATATAGTTGCTAGTGGTAGTGAAG 712
Query 796 ACAAACAAGTTAAAGTTTGGGATGTTGCTACTGA-AACATGCCAGATTACTCTGGAGCAT 854
||||| |||| || ||||||||||| ||||| | || |||| || ||||| ||||||||
Sbjct 713 ACAAAAAAGTGAAGGTTTGGGATGTGGCTACGGGGAA-ATGCAAGGTTACTATGGAGCAT 771
Query 855 CAC-ACAAAGGGGGTTCAAGCGGTTGCTTGGAACCATTATGCTCCGGAAGTACTTCTTAG 913
||| | |||| |||||| |||||||| |||||| ||||| |||| |||||||| || ||
Sbjct 772 CACGA-AAAGAAGGTTCACGCGGTTGCATGGAACAATTATACTCCAGAAGTACTCCTCAG 830
Query 914 TGGGTCATT-TGATCGCACTGTTGTATTGAAAGATGTAAGAAAGCCTTCACACTCGGGTT 972
|||||| | |||||| ||||| ||||||||||||| ||| | |||||| |||||||||
Sbjct 831 TGGGTC-TCGTGATCGTACTGTAGTATTGAAAGATGGAAGGGACCCTTCAAACTCGGGTT 889
Query 973 TCAAATGGTC-AGTC-ATTTCCAAAGTTGAAAGCTTAGCCTGGGATCCACATAGCGAATA 1030
| |||||||| | | | ||||||| |||| || || |||||||| || |||||| |
Sbjct 890 TGAAATGGTCTAC-CGAGG-CCAAAGTCGAAAAATTGGCTTGGGATCCTCACAGCGAACA 947
Query 1031 CTCCTTTTTGGTTAGTCTCAAAGATGGAACTGTGAAGGGTTTTGATGTTCGTCAAGCCTC 1090
||||||| |||| |||||||||||||||||||||||||| |||||| ||| || ||
Sbjct 948 CTCCTTTGTGGTGAGTCTCAAAGATGGAACTGTGAAGGGCTTTGATACACGT---GCTTC 1004
Query 1091 AACTTCAACCTCTGATTCAAATCCAAGTTTCACTCTCCAA-C--ATGGACGTAAAGCAGT 1147
| | | | || || |||||||||| | |||| | ||| | || | |||
Sbjct 1005 ---TG-AT--T-T-AT-CA---CCAAGTTTCATTATCCATGCTCATG-A--TAGTGAAGT 1049
Query 1148 CACTTCCATCTCATACAACGTTTC-TGCACCTAATCTTTTGGCAACTGGATCTACGGATC 1206
| | ||||| ||||||||| | | ||| || ||||||||||| || |||||| |||||
Sbjct 1050 CTCCTCCATATCATACAACATA-CATGCCCCCAATCTTTTGGCTACGGGATCTGCGGATG 1108
Query 1207 AATCG-GT-AAAGCTTTGGGATCTTTCAAACAATGAACCTTCATGCATTGCTACACACC- 1263
|| | || ||| |||||||||||||||||||| |||| ||||| ||||||||| ||
Sbjct 1109 AAA-GTGTGAAA-CTTTGGGATCTTTCAAACAACCAACCATCATGGATTGCTACAAACAA 1166
Query 1264 GACCAAATGCTGGACGCTTATTTTC-CATTGC-C-TTCTCTA-CGGACAATCCTTTCTTA 1319
| |||||||||||| | ||||| | | | | ||||| | ||||| || ||||||
Sbjct 1167 G-CCAAATGCTGGA-GAAG-TTTTCTCGGT-CTCATTCTC-AGCGGACTGCCCCTTCTTA 1221
Query 1320 CTCGCTATGGGTGGC-CTTATGGGC-AAGT-TAAAAGTTTGGGATATACTT-TCGGACAC 1375
|||||| | |||||| | | |||| || | ||| || ||||||| ||| || |||||
Sbjct 1222 CTCGCTGTTGGTGGCTCAGAGGGGCTAAATGTAA--GTGTGGGATAC-CTTATCAGACAC 1278
Query 1376 TAATGTCTCCAGCAGATACGGAAGCAG 1402
| ||| ||| | ||||| || |||||
Sbjct 1279 TGCTGTGTCCCGAAGATATGGTAGCAG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5