BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946306 Length=1649 Score E Sequences producing significant alignments: (Bits) Value AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2390 0.0 > AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=1638 Length=1638 Score = 2390 bits (1294), Expect = 0.0 Identities = 1483/1574 (94%), Gaps = 13/1574 (1%) Strand=Plus/Plus Query 1 CAGAAAGAGAA-TTGaaaaaaaTGAGTGCTTGTTCATCAACAACTCCAGTACCGATTCTG 59 ||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 73 CAGAAAGAGAATTTGAAAAAAATGAGTGTTTGTTCAT---CAACTCCAGTACCGATTCTC 129 Query 60 TCATTCACAGAGAGAGCTAAATCTCTGTTGGAGATTCAACAAGCTCACGCCTTTATGCTC 119 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 130 TCATTCACAGAGAGAGCTAAATCTCTGACGGAGATTCAACAAGCTCACGCCTTTATGCTC 189 Query 120 AAAACCGGTCTTTTTCACGACACGTTTTCTGCGAGCAAGCTTGTTGCCTTCGCTGCAACA 179 ||||||||||||||||| ||||||||||| ||||||||||||||||| || ||||||||| Sbjct 190 AAAACCGGTCTTTTTCATGACACGTTTTCCGCGAGCAAGCTTGTTGCTTTTGCTGCAACA 249 Query 180 AACCCAGAACCCAAAACTGTCTCTTACGCTCACTCTATTCTCAATCGAATCGAGAGCCCT 239 ||||||||||||||||| ||||||||||||||||||||||||||||| || | ||||||| Sbjct 250 AACCCAGAACCCAAAACAGTCTCTTACGCTCACTCTATTCTCAATCGCATTGGGAGCCCT 309 Query 240 AATGGGTTCACTCACAATTCCGTTATCAGAGCTTATGCGAATAGCTCTACTCCTGAGATT 299 ||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| || Sbjct 310 AATGGGTTCACTCACAATTCCGTCATCAGGGCTTATGCTAATAGCTCTACTCCTGAGGTT 369 Query 300 GCTTTAACCGTGTTTCGTGAAATGCTTCTTGGTCCTGTGTTTCCCGATAAGTATAGCTTC 359 || ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||| Sbjct 370 GCCTTAACCGTGTTTCGTGAAATGCTTCTTGGTCCTGTTTTTCCTGATAAGTACAGCTTC 429 Query 360 ACGTTTGTGTTGAAAGCTTGTGCTGCGTTTTGTGGGTTTGAAGAAGGAAGGCAAATTCAC 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 430 ACGTTTGTGTTGAAAGCTTGTGCTGCGTTTTGTGGGTTTGAAGAAGGAAGGCAAATTCAC 489 Query 420 GGTCTTTTTATGAAGAGTGATTTGGTGACTGATGTGTTTGTGGAGAATACTTTGGTTAAT 479 ||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 490 GGTCTTTTTATCAAGAGTGGTTTGGTGACTGATGTGTTTGTTGAGAATACTTTGGTTAAT 549 Query 480 GTTTATGGAAGATGCGGTTACTTTGAGATTGCACGTAAAGTGCTCGATAGAATGCCTGTG 539 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 GTTTATGGACGAAGCGGTTACTTTGAGATTGCACGTAAAGTGCTCGATAGAATGCCTGTG 609 Query 540 AGAGATGCTGTTTCTTGGAATTCGTTGTTGAGTGCTTATCTTGATAAGGGTTTGGTGGAA 599 |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||| Sbjct 610 AGAGATGCTGTTTCTTGGAATTCGTTGTTGAGTGCTTATCTTGAGAAAGGTTTAGTGGAT 669 Query 600 GAAGCTCGTGCGTTGTTTGATGAGATGGAGGAACGGAATGTGGAGTCTTGGAATTTTATG 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 670 GAAGCTCGTGCGTTGTTTGATGAGATGGAGGAACGGAATGTGGAGTCTTGGAATTTTATG 729 Query 660 ATTTCGGGTTATGCGGCTGCGGGGTTGGTTAAGGAAGCGAAAGAGGTTTTCGATTCTATG 719 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 730 ATTTCGGGTTATGCGGCTGCGGGGTTGGTTAAGGAAGCCAAGGAGGTTTTCGATTCTATG 789 Query 720 CCGGTGAAAGATGTGGTTTCTTGGAATGCTATGGTGACTGCTTATGCACATGTGGGTTGC 779 ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 790 CCGGTTAGAGATGTGGTTTCTTGGAACGCTATGGTGACTGCTTATGCACATGTGGGTTGT 849 Query 780 TACAACGAGGTTTTAGAGGTTTTCAATAAGATGCTGGATGATTC-AGCAGAGAGACCAGA 838 ||||||||||||||||||||||| |||||||||||||||||||| | |||||| |||||| Sbjct 850 TACAACGAGGTTTTAGAGGTTTTTAATAAGATGCTGGATGATTCCA-CAGAGAAACCAGA 908 Query 839 TGGTTTTACTCTTGTTAATGTTTTATCTGCGTGTGCTAGTCTTGGATCCTTGAGTCAAGG 898 ||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||| Sbjct 909 TGGTTTTACTCTTGTTAGTGTTTTATCTGCTTGTGCTAGTCTTGGATCTTTGAGTCAAGG 968 Query 899 TGAGTGGGTACATGTTTACATAGACAAGCATGGGATTGAGATTGAAGGGTTTGTGGCAAC 958 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || Sbjct 969 TGAGTGGGTACATGTTTACATAGACAAGCATGGGATTGAGATTGAAGGGTTTTTGGCTAC 1028 Query 959 AGCTCTTGTGGATATGTATTCGAAGTGTGGGAAAATTGATAAGGCTCTTGAAGTGTTTAG 1018 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1029 AGCTCTTGTGGATATGTATTCGAAGTGTGGGAAAATTGACAAGGCTCTTGAAGTGTTTAG 1088 Query 1019 AGCTACTTCAAAGACAGATGTCAGTACATGGAACTCGATAATCACGGGTTTGAGCGTCCA 1078 |||||||||||||| |||||||||||||||||||||||||||| ||| |||||| || || Sbjct 1089 AGCTACTTCAAAGAGAGATGTCAGTACATGGAACTCGATAATCTCGGATTTGAGTGTTCA 1148 Query 1079 CGGTCTTGGAAAAGATTCTTTAGAGATCTTCTCAGAGATGGTATATGAAGGTTTTAAACC 1138 |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1149 CGGTCTTGGAAAAGATGCTTTAGAGATCTTCTCGGAGATGGTGTATGAAGGTTTTAAACC 1208 Query 1139 AAATGGTATCACATTTATTGGTGTTTTGTCGGCCTGCAATCATGTGGGTTTGTTAGACCA 1198 ||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||| Sbjct 1209 AAATGGTATCACATTTATTGGTGTTCTGTCGGCCTGTAATCATGTGGGTATGTTAGACCA 1268 Query 1199 AGCTCGCAAACTTTTTGAAATGATGAATAGTGTGTAC-GGGATTGAGCCAACTATTGAAC 1257 |||||||||||||||||||||||||| |||||| ||| ||| |||| || |||||||||| Sbjct 1269 AGCTCGCAAACTTTTTGAAATGATGAGTAGTGTTTACAGGG-TTGAACCTACTATTGAAC 1327 Query 1258 ACTATGGTTGTATGGTCGATTTGCTTGGTCGGATGGGAAAATTTGAGGAAGCAGAAGAAC 1317 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 1328 ACTATGGTTGTATGGTGGATTTGCTTGGTCGGATGGGAAAAATTGAGGAAGCAGAAGAAC 1387 Query 1318 TTGTGAACGAGGTTCCAGCAGATGAGGCTTCCATTTTACTAGAATCTCTTCTTGGTGCCT 1377 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 TTGTGAACGAGATTCCAGCAGATGAGGCTTCCATTTTACTAGAATCTCTTCTTGGTGCCT 1447 Query 1378 GTAAAAGGTTTGGAAAACTGGAACAAGCAGAGCGTATAGCAAATCGGTTACTGGAGTTGA 1437 |||| ||||||||| || |||||||||||||||||||||| |||||||||||||| |||| Sbjct 1448 GTAAGAGGTTTGGACAATTGGAACAAGCAGAGCGTATAGCGAATCGGTTACTGGAATTGA 1507 Query 1438 ATCCACGTGAGAGTTCAGGTTATGTTCAGATGTCAAACTTGTATGCCTCTCATGGTAGAT 1497 ||| |||||| ||||||||||||| |||||||||||| ||||||||||| |||| || | Sbjct 1508 ATCTACGTGATAGTTCAGGTTATGCTCAGATGTCAAATTTGTATGCCTCAGATGGAAGGT 1567 Query 1498 GGGATGA-GGTTATGGA-GGTGAGAGGAAAGATGAGAGCAGAAAGAGTAAAGAAGAAGCC 1555 |||| || |||||| || ||| ||| |||| |||||||||||||||||||| | |||||| Sbjct 1568 GGGA-GAAGGTTATAGACGGT-AGAAGAAACATGAGAGCAGAAAGAGTAAACA-GAAGCC 1624 Query 1556 TGGATGTAGCATGA 1569 |||||||||||||| Sbjct 1625 TGGATGTAGCATGA 1638 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81475484535 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5