BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946306
Length=1649
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2390 0.0
> AT4G18840.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr4:10338719-10340356 REVERSE LENGTH=1638
Length=1638
Score = 2390 bits (1294), Expect = 0.0
Identities = 1483/1574 (94%), Gaps = 13/1574 (1%)
Strand=Plus/Plus
Query 1 CAGAAAGAGAA-TTGaaaaaaaTGAGTGCTTGTTCATCAACAACTCCAGTACCGATTCTG 59
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 73 CAGAAAGAGAATTTGAAAAAAATGAGTGTTTGTTCAT---CAACTCCAGTACCGATTCTC 129
Query 60 TCATTCACAGAGAGAGCTAAATCTCTGTTGGAGATTCAACAAGCTCACGCCTTTATGCTC 119
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 130 TCATTCACAGAGAGAGCTAAATCTCTGACGGAGATTCAACAAGCTCACGCCTTTATGCTC 189
Query 120 AAAACCGGTCTTTTTCACGACACGTTTTCTGCGAGCAAGCTTGTTGCCTTCGCTGCAACA 179
||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||
Sbjct 190 AAAACCGGTCTTTTTCATGACACGTTTTCCGCGAGCAAGCTTGTTGCTTTTGCTGCAACA 249
Query 180 AACCCAGAACCCAAAACTGTCTCTTACGCTCACTCTATTCTCAATCGAATCGAGAGCCCT 239
||||||||||||||||| ||||||||||||||||||||||||||||| || | |||||||
Sbjct 250 AACCCAGAACCCAAAACAGTCTCTTACGCTCACTCTATTCTCAATCGCATTGGGAGCCCT 309
Query 240 AATGGGTTCACTCACAATTCCGTTATCAGAGCTTATGCGAATAGCTCTACTCCTGAGATT 299
||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||
Sbjct 310 AATGGGTTCACTCACAATTCCGTCATCAGGGCTTATGCTAATAGCTCTACTCCTGAGGTT 369
Query 300 GCTTTAACCGTGTTTCGTGAAATGCTTCTTGGTCCTGTGTTTCCCGATAAGTATAGCTTC 359
|| ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||
Sbjct 370 GCCTTAACCGTGTTTCGTGAAATGCTTCTTGGTCCTGTTTTTCCTGATAAGTACAGCTTC 429
Query 360 ACGTTTGTGTTGAAAGCTTGTGCTGCGTTTTGTGGGTTTGAAGAAGGAAGGCAAATTCAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ACGTTTGTGTTGAAAGCTTGTGCTGCGTTTTGTGGGTTTGAAGAAGGAAGGCAAATTCAC 489
Query 420 GGTCTTTTTATGAAGAGTGATTTGGTGACTGATGTGTTTGTGGAGAATACTTTGGTTAAT 479
||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 490 GGTCTTTTTATCAAGAGTGGTTTGGTGACTGATGTGTTTGTTGAGAATACTTTGGTTAAT 549
Query 480 GTTTATGGAAGATGCGGTTACTTTGAGATTGCACGTAAAGTGCTCGATAGAATGCCTGTG 539
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTTATGGACGAAGCGGTTACTTTGAGATTGCACGTAAAGTGCTCGATAGAATGCCTGTG 609
Query 540 AGAGATGCTGTTTCTTGGAATTCGTTGTTGAGTGCTTATCTTGATAAGGGTTTGGTGGAA 599
|||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 610 AGAGATGCTGTTTCTTGGAATTCGTTGTTGAGTGCTTATCTTGAGAAAGGTTTAGTGGAT 669
Query 600 GAAGCTCGTGCGTTGTTTGATGAGATGGAGGAACGGAATGTGGAGTCTTGGAATTTTATG 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 GAAGCTCGTGCGTTGTTTGATGAGATGGAGGAACGGAATGTGGAGTCTTGGAATTTTATG 729
Query 660 ATTTCGGGTTATGCGGCTGCGGGGTTGGTTAAGGAAGCGAAAGAGGTTTTCGATTCTATG 719
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 730 ATTTCGGGTTATGCGGCTGCGGGGTTGGTTAAGGAAGCCAAGGAGGTTTTCGATTCTATG 789
Query 720 CCGGTGAAAGATGTGGTTTCTTGGAATGCTATGGTGACTGCTTATGCACATGTGGGTTGC 779
||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 790 CCGGTTAGAGATGTGGTTTCTTGGAACGCTATGGTGACTGCTTATGCACATGTGGGTTGT 849
Query 780 TACAACGAGGTTTTAGAGGTTTTCAATAAGATGCTGGATGATTC-AGCAGAGAGACCAGA 838
||||||||||||||||||||||| |||||||||||||||||||| | |||||| ||||||
Sbjct 850 TACAACGAGGTTTTAGAGGTTTTTAATAAGATGCTGGATGATTCCA-CAGAGAAACCAGA 908
Query 839 TGGTTTTACTCTTGTTAATGTTTTATCTGCGTGTGCTAGTCTTGGATCCTTGAGTCAAGG 898
||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 909 TGGTTTTACTCTTGTTAGTGTTTTATCTGCTTGTGCTAGTCTTGGATCTTTGAGTCAAGG 968
Query 899 TGAGTGGGTACATGTTTACATAGACAAGCATGGGATTGAGATTGAAGGGTTTGTGGCAAC 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 969 TGAGTGGGTACATGTTTACATAGACAAGCATGGGATTGAGATTGAAGGGTTTTTGGCTAC 1028
Query 959 AGCTCTTGTGGATATGTATTCGAAGTGTGGGAAAATTGATAAGGCTCTTGAAGTGTTTAG 1018
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1029 AGCTCTTGTGGATATGTATTCGAAGTGTGGGAAAATTGACAAGGCTCTTGAAGTGTTTAG 1088
Query 1019 AGCTACTTCAAAGACAGATGTCAGTACATGGAACTCGATAATCACGGGTTTGAGCGTCCA 1078
|||||||||||||| |||||||||||||||||||||||||||| ||| |||||| || ||
Sbjct 1089 AGCTACTTCAAAGAGAGATGTCAGTACATGGAACTCGATAATCTCGGATTTGAGTGTTCA 1148
Query 1079 CGGTCTTGGAAAAGATTCTTTAGAGATCTTCTCAGAGATGGTATATGAAGGTTTTAAACC 1138
|||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1149 CGGTCTTGGAAAAGATGCTTTAGAGATCTTCTCGGAGATGGTGTATGAAGGTTTTAAACC 1208
Query 1139 AAATGGTATCACATTTATTGGTGTTTTGTCGGCCTGCAATCATGTGGGTTTGTTAGACCA 1198
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct 1209 AAATGGTATCACATTTATTGGTGTTCTGTCGGCCTGTAATCATGTGGGTATGTTAGACCA 1268
Query 1199 AGCTCGCAAACTTTTTGAAATGATGAATAGTGTGTAC-GGGATTGAGCCAACTATTGAAC 1257
|||||||||||||||||||||||||| |||||| ||| ||| |||| || ||||||||||
Sbjct 1269 AGCTCGCAAACTTTTTGAAATGATGAGTAGTGTTTACAGGG-TTGAACCTACTATTGAAC 1327
Query 1258 ACTATGGTTGTATGGTCGATTTGCTTGGTCGGATGGGAAAATTTGAGGAAGCAGAAGAAC 1317
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1328 ACTATGGTTGTATGGTGGATTTGCTTGGTCGGATGGGAAAAATTGAGGAAGCAGAAGAAC 1387
Query 1318 TTGTGAACGAGGTTCCAGCAGATGAGGCTTCCATTTTACTAGAATCTCTTCTTGGTGCCT 1377
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 TTGTGAACGAGATTCCAGCAGATGAGGCTTCCATTTTACTAGAATCTCTTCTTGGTGCCT 1447
Query 1378 GTAAAAGGTTTGGAAAACTGGAACAAGCAGAGCGTATAGCAAATCGGTTACTGGAGTTGA 1437
|||| ||||||||| || |||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1448 GTAAGAGGTTTGGACAATTGGAACAAGCAGAGCGTATAGCGAATCGGTTACTGGAATTGA 1507
Query 1438 ATCCACGTGAGAGTTCAGGTTATGTTCAGATGTCAAACTTGTATGCCTCTCATGGTAGAT 1497
||| |||||| ||||||||||||| |||||||||||| ||||||||||| |||| || |
Sbjct 1508 ATCTACGTGATAGTTCAGGTTATGCTCAGATGTCAAATTTGTATGCCTCAGATGGAAGGT 1567
Query 1498 GGGATGA-GGTTATGGA-GGTGAGAGGAAAGATGAGAGCAGAAAGAGTAAAGAAGAAGCC 1555
|||| || |||||| || ||| ||| |||| |||||||||||||||||||| | ||||||
Sbjct 1568 GGGA-GAAGGTTATAGACGGT-AGAAGAAACATGAGAGCAGAAAGAGTAAACA-GAAGCC 1624
Query 1556 TGGATGTAGCATGA 1569
||||||||||||||
Sbjct 1625 TGGATGTAGCATGA 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81475484535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5