BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946314
Length=1313
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18770.1 | Symbols: MYB98, AtMYB98 | myb domain protein 98 |... 2037 0.0
> AT4G18770.1 | Symbols: MYB98, AtMYB98 | myb domain protein 98
| chr4:10311030-10313104 FORWARD LENGTH=1869
Length=1869
Score = 2037 bits (1103), Expect = 0.0
Identities = 1265/1337 (95%), Gaps = 35/1337 (3%)
Strand=Plus/Plus
Query 1 TTTTTCTCCTTTCCCAAAA-AATGGAGAATTTCGTCGACGAAAATGCTTTTG-TTCCTCT 58
|||||||||||| |||||| ||||||||||||||||||||| |||| ||||| || ||||
Sbjct 19 TTTTTCTCCTTT-CCAAAACAATGGAGAATTTCGTCGACGAGAATGGTTTTGCTT-CTCT 76
Query 59 AAACCAAAACATCTTCACACGTGATCAAGAACACATGAAAGAAGAAGATTTTCCATTCGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AAACCAAAACATCTTCACACGTGATCAAGAACACATGAAAGAAGAAGATTTTCCATTCGA 136
Query 119 AGTCGTCGACCAATCAAAACCCATTAGCTTTCTTCAAGATTTtcaccatcttgatcatga 178
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 137 AGTCGTCGACCAATCAAAACCTACAAGCTTTCTTCAAGATTTTCACCATCTTGATCATGA 196
Query 179 tcatcagtttg---atcatcatcatcatggctcctcatcttcacatcCTTTGCTC-G-GT 233
||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 197 TCATCAGTTTGATCATCATCATCATCATGGCTCCTCATCTTCACATCCTTTGCTCAGCGT 256
Query 234 CACCAAGCAACGTCGTCTTGTATCAATAATGCTCCTTTCCAGCATTGCTCTTACCAAGAA 293
|||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 257 --CCAAACTACGTCTTCTTGTATCAATAATGCTCCTTTCGAGCATTGCTCTTACCAAGAA 314
Query 294 AACATGAG-CGAGTTT-TATGAAACCAAACCACATTTGATG-A--ATCATCATTTCCAAG 348
|||||| | ||| ||| |||||||| |||||| |||||||| | |||||||||||||||
Sbjct 315 AACATG-GTCGA-TTTCTATGAAACTAAACCAAATTTGATGAATCATCATCATTTCCAAG 372
Query 349 CAGCGGAAAACTCATACTTCACTCATAAT-A--ATCATCATCAAGAGATCAATATGGTCG 405
||| |||||||||||||||||||| |||| | |||||||||||||||||||| ||||||
Sbjct 373 CAGTGGAAAACTCATACTTCACTCGTAATCATCATCATCATCAAGAGATCAATTTGGTCG 432
Query 406 ATGAAC---ATGATCCTATGGACTTGGATCAAAACAACATGATGATGATGAGGATGATCC 462
|||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 433 ATGAACATGATGATCCTATGGACTTGGAGCAAAACAACATGATGATGATGAGGATGATCC 492
Query 463 CTTTTGATTACCCTCCTACAGAGACTTTCAAACCTATGAACTTCGTGATGCCAGATGAAA 522
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 493 CTTTTGATTACCCTCCTACAGAGACTTTCAAACCTATGAACTTCGTAATGCCAGATGAAA 552
Query 523 TTTCATGTGTTTCTGCAGATAATGATTGTTATAGAGCGACGAGTTTCAACAAGACCAAAC 582
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 553 TTTCATGTGTTTCTGCAGATAATGATTGTTATAGAGCAACAAGTTTCAACAAGACCAAAC 612
Query 583 CATTTCTTACACGCAAGTTGTCTTCTTCTTCTTCATCATCATCATGGAAAGAAAACAAAA 642
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 613 CATTTCTTACACGAAAGTTGTCTTCTTCTTCTTCATCATCATCATGGAAAGAAACCAAAA 672
Query 643 AGTCAACCTTAGTCAAAGGACAATGGACTTCTGAAGAAGACAGGGTACTGATTCAACTCG 702
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 673 AGTCAACCTTAGTCAAAGGACAATGGACTGCTGAAGAAGACAGGGTACTGATTCAACTCG 732
Query 703 TGGAGAAGTATGGATTGCGAAAATGGTCGCATATCGCTCAAGTGTTACCGGGAAGGATCG 762
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 733 TGGAGAAGTATGGATTGCGTAAATGGTCGCATATCGCTCAAGTGTTACCGGGAAGAATCG 792
Query 763 GGAAACAATGTAGAGAGAGGTGGCATAACCATTTGAGACCTGACATTAAGAAAGAAACAT 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 GGAAACAATGTAGAGAGAGGTGGCATAACCATTTGAGACCTGACATTAAGAAAGAAACAT 852
Query 823 GGAGTGAAGAAGAGGACAGGGTGTTGATAGAATTTCACAAAGAGATTGGAAACAAATGGG 882
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 853 GGAGTGAAGAAGAGGACAGAGTGTTGATAGAATTTCACAAAGAGATTGGAAACAAATGGG 912
Query 883 CAGAGATTGCTAAAAGACTCCCTGGAAGAACAGAGAACTCGATCAAGAACCATTGGAACG 942
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 913 CAGAGATTGCGAAAAGACTCCCGGGAAGAACAGAGAACTCGATCAAGAACCATTGGAACG 972
Query 943 CGACAAAACGAAGACAATTCTCTAAAAGAAAGTGTAGATCTAAGTATCCAAGACCTTCTC 1002
| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 973 CAACAAAAAGAAGACAATTCTCTAAAAGAAAATGTAGATCTAAGTATCCAAGACCTTCTC 1032
Query 1003 TATTGCAGGATTACATCAAGAGCTTGAATATGGGAGTTTTG-TCGGCTTCATCTGTTCCT 1061
| |||||||||||||||||||||||||||||||||| |||| | |||||| |||||||||
Sbjct 1033 TGTTGCAGGATTACATCAAGAGCTTGAATATGGGAGCTTTGAT-GGCTTCTTCTGTTCCT 1091
Query 1062 GCAAGAGGTAGACGCAGAGAGAG---TAACAAGAAGAAGGATGTTGTTGTTGCCGCGGTT 1118
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1092 GCAAGAGGTAGACGCAGAGAGAGTAATAACAAGAAGAAGGATGTTGTTGTT---GCGGTT 1148
Query 1119 GAGGAGAAGAAGAAGGAAGAGGAGATTTATGGACAAGACAGGATTGTGCCTGAATGTGTG 1178
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1149 GAGGAGAAGAAGAAGGAAGAGGAGGTGTATGGACAAGACAGGATTGTGCCTGAATGTGTG 1208
Query 1179 TTTACTGATGATTTTGGATTCAATGAGAAGCTGCTTGAGGAAGGATGTAGCATTGACTCT 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 TTTACTGATGATTTTGGATTCAATGAGAAGCTGCTTGAGGAAGGATGTAGCATTGACTCT 1268
Query 1239 TTGCTTGATGACATTCCTCAGCCTGACATTGATGCTTTTGTTCATGGAATCTGATTTATA 1298
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1269 TTGCTTGATGACATTCCTCAGCCTGACATTGATGCTTTTGTTCATGGACTCTGATTTGTA 1328
Query 1299 CTTCTTT-TT-TGCTTG 1313
|| ||| || ||||||
Sbjct 1329 TTT-TTTATTCTGCTTG 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64608101415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5