BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946315
Length=1337
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18760.1 | Symbols: AtRLP51, RLP51 | receptor like protein 5... 2122 0.0
> AT4G18760.1 | Symbols: AtRLP51, RLP51 | receptor like protein
51 | chr4:10308163-10309458 REVERSE LENGTH=1296
Length=1296
Score = 2122 bits (1149), Expect = 0.0
Identities = 1250/1299 (96%), Gaps = 6/1299 (0%)
Strand=Plus/Plus
Query 21 ATGAAACCTCCGTCGTTACCGTTActcctcctcctcctccacctctcagccactatctcc 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAACCTCCGTCGTTACCGTTACTCCTCCTCCTCCTCCACCTCTCAGCCACTATCTCC 60
Query 81 gccgctccttccctctctccaactccatctccaaccatctctcccattccacctcacaaa 140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GCCGCTCCTTCCCTCTCTCCAACTCCATCTCCAACCACCTCTCCCATTCCACCTCACAAA 120
Query 141 ccttcctcctcctcttccCCATTAGACCCAAAACAACTCAAAGCCCTCGAATCTCTCAAC 200
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 CCTTCCTCATCCTCTTCCCCATTAGACCCAAAACAACTCAAAGCCCTTGAATCTCTCAAC 180
Query 201 ATCCCCACCGTCAAAGATCCTTGCAACCACCGTCCCACCACCAAATCCACCTCCTCCTCC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATCCCCACCGTCAAAGATCCTTGCAACCACCGTCCCACCACCAAATCCACCTCCTCCTCC 240
Query 261 GTCGTAACCTGCGACACCAGCTCCCCATTTCGTCTCGTTACTTCCATCTCCTTCACAAAT 320
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 GTCGTAACCTGCGACACCAGCTCCCCATTTCGCCTCGTCACTTCCATCTCCTTCACAAAT 300
Query 321 TGctccaccgatctctccatctccacaacagctctcagagctctctcaccatctctaacc 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGCTCCACCGATCTCTCCATCTCCACAACAGCTCTCAGAGCTCTCTCACCATCTCTAACC 360
Query 381 tctctctctttcctcaactgcccatctctctcacctcctccacgtctccctgactcactc 440
|||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||
Sbjct 361 TCTCTCTCTTTCCTCAACTGTCCTTCACTCTCCCCTCCTCCACGTCTCCCTGACTCACTC 420
Query 441 cactccttctccgccgtctcctccttcctccGCCACCGTAATGGCCTCTCCGGAGTCTTC 500
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CACTCCTTCACCGCCGTCTCCTCCTTCCTCCGCCGCCGTAATGGCCTCTCCGGAGTCTTC 480
Query 501 CTAGCTCGTCTCGTTAACCTCACTGACCTCACAGTCTCCTCTGTTCCTGTCTCAACCTCT 560
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 481 TTAGCTCGTCTCGTTAACCTCACTGACCTCACAGTCTCTTCTGTTCCAGTCTCAACCTCT 540
Query 561 GGTCTCTTCGTTATCCTCGGAAATATGCACAAGATCGTCTCTTTGACAATCTCTCACGCA 620
||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||
Sbjct 541 GGTCTCTTCGTTATCCTAGGAAATATGCACGAGATCGTCTCTTTGACAATCTCACACGCA 600
Query 621 AATCTCTCCGGAAACATACCTAAATCTTTCCACTCAAATCTCACATTCATCGATTTATCA 680
||||||||||||||||| |||||||| ||||||||||||||||||||||| || ||||||
Sbjct 601 AATCTCTCCGGAAACATCCCTAAATCATTCCACTCAAATCTCACATTCATTGACTTATCA 660
Query 681 GATAA-CTTGATCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTC 739
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GACAATCTAC-TCAAAGGCTCAATACCCACTTCCATTACTCTGCTCTCAAACCTAAAGTC 719
Query 740 TCTAAATTTATCCAAAAACTCCATCTCCGGCGACATACCCGACTCAATCGGTGACCTAAT 799
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 720 TCTAAATTTATCCAAAAACACCATCTCCGGAGACATACCCGACTCAATCGGTGACCTAAT 779
Query 800 CTCACT-AAAAAACCTATCTTTATCCTCTAACAAGCTATCAGGACCAATCCCAGATTCGA 858
||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 780 CTC-CTTAAAAAACCTATCTTTATCCTCAAACAAGCTATCAGGACCAATCCCAGATTCAA 838
Query 859 TCTCGTCGATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCG 918
|||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TCTCATCCATTCCAGAGCTTACACACTTAGATCTGAGTGGGAACCAACTAAACGGCACCA 898
Query 919 TTCCAAGATTCATCTCCAAGATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCT 978
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TTCCAAGATTCATCTCCAAAATGAAGTATCTCACACACTTGAATCTAGCTAACAATGCCT 958
Query 979 TCCATGGAGTTCTACCGTTCAATGCTAGCTTCATCAAGAAACTCGAAGTGTTCAAAATCG 1038
|||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 959 TCCATGGAGTTCTACCATTCAATGCGAGCTTTATCAAGAATCTCGAAGTGTTCAAAATCG 1018
Query 1039 GTGGAAACAGTGATCTTTGTTACAACCATAGTGT-TCTGTCATCGAAGATGAAATTGGGT 1097
|||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1019 GTGGAAACAGTGATCTTTGTTACAACCATAGTGTAT-TGTCATCGAAGATGAAATTGGGT 1077
Query 1098 ATTGCTCAGTGTGATAAACATGGTTTGCCTTTGTCTCCACCGCCGCAGAAAGAAAATTCG 1157
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1078 ATTGCTCAGTGTGATAAACATGGTTTGCCTTTGTCTCCACCGCCGCAGAAAGAAGATTCG 1137
Query 1158 AATTCAGATTATGATTATGGTAATGAAGATGACACTAGTGAGAAGAAGAAAGAAGAGCAT 1217
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 AATTCAGATTATGATTACGGAAATGAAGATGATACTAGTGAGAAGAAGAAAGAAGAGCAT 1197
Query 1218 CATGGTCCTAATAAAGTTGTGCTTGGTGTTGCTATTGGACTCTCTTCGCTTGTGTTCTTG 1277
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1198 CATGGTCCTAATAAAGTTGTGCTTGGTGTTGCTATTGGACTTTCTTCACTTGTGTTCTTA 1257
Query 1278 ATCATCTTCATGATCCTTCTCGCCAAATGGTGTGGTTGA 1316
|||||||||||||||||||||||||||||||||||||||
Sbjct 1258 ATCATCTTCATGATCCTTCTCGCCAAATGGTGTGGTTGA 1296
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65812914495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5