BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946316
Length=2658
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR) su... 4021 0.0
AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein o... 87.9 5e-16
AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-contai... 65.8 2e-09
> AT4G18750.1 | Symbols: DOT4 | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:10304850-10307570 FORWARD LENGTH=2721
Length=2721
Score = 4021 bits (2177), Expect = 0.0
Identities = 2487/2640 (94%), Gaps = 8/2640 (0%)
Strand=Plus/Plus
Query 21 ATGGCGATGTTGGTGACGAATTTGTCTTCTTCAAGCTTCTGTTTCTTTTCCTCTCCCCAT 80
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1 ATGGCGATGTTGGTGACGAATTTATCTTCTTCAAGCTTCTGTTTTTTTTCCTCTCCTCAT 60
Query 81 TTTCAAACCCACAAAGAGCTCAGAAGCGACGTTAGAGTTCGAAAAGATGTGATTTTTAAC 140
|| |||| ||| || ||| ||||||||| |||||||||||||||| |||||||||| ||
Sbjct 61 TTACAAAACCAGAAGGAGATCAGAAGCGGCGTTAGAGTTCGAAAATATGTGATTTTCAAT 120
Query 141 AGAGCCTCGTTGAGAACAGTATCAGATCGTGCGGATTCGATTTCAACTTTTGATCGAAGC 200
||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct 121 AGAGCCTCGTTGAGAACAGTATCAGATTGTGTTGATTCGATTACAACTTTTGATCGAAGC 180
Query 201 GTAACAGATGCGAACACTCGATTACGGAGATTCTGCGAATCAGGTAATCTAAAGAACGCC 260
||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||
Sbjct 181 GTAACAGATGCGAACACTCAATTACGGAGATTCTGCGAATCAGGGAATCTAGAGAACGCC 240
Query 261 GTGAAGCTTCTTCATGTATCTGGGAAATGGGATATAGATCCGAGAACTTTATGCTCTGTT 320
||||| |||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 241 GTGAAACTTCTTTGCGTATCTGGAAAATGGGATATTGATCCGAGAACTTTATGCTCTGTT 300
Query 321 CTTCAACTCTGTGCTGATTCAAAATCTCTCAAAGATGGTAAAGAAGTTGATAACTTTATT 380
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTTCAGCTCTGTGCTGATTCGAAATCTCTCAAAGATGGTAAAGAAGTTGATAACTTTATT 360
Query 381 CGTAGTAATGGGTTTGTGTTAGATTCGAATTTGGGATCGAAACTAGCGCTTATGTATACA 440
||| |||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||
Sbjct 361 CGTGGTAATGGGTTTGTGATAGATTCGAATTTGGGATCAAAACTCTCTCTTATGTATACA 420
Query 441 AATTGTGGGGATTTGAAAGAAGCGAGTAGAGTTTTCGATCAGGTTAAGATCGAGAAAGCT 500
|||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 421 AATTGTGGAGATTTGAAAGAAGCAAGTAGAGTGTTCGATGAGGTTAAGATCGAGAAAGCA 480
Query 501 TTGTTCTGGAATATTTTGATGAATGAGCTTGCAAAGTCTGGTGATTTTAGTGGGAGTATT 560
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 481 TTGTTCTGGAATATTTTGATGAATGAGCTTGCAAAATCTGGTGACTTTAGTGGGAGTATT 540
Query 561 GGATTGTTTAAGAGGATGATGAGTTCTGGTGTTGAAATGGATAGTTATACTTTTTCTTGT 620
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 GGATTGTTTAAGAAGATGATGAGTTCTGGTGTTGAAATGGATAGCTATACTTTTTCTTGT 600
Query 621 ATTTCAAAGAGTTTTTCGTCTTTACGAAGTGTTAATGGAGGAGAACAGCTTCATGGGTAT 680
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | |
Sbjct 601 GTTTCAAAGAGTTTTTCGTCTTTACGAAGTGTTCATGGAGGAGAGCAGCTTCATGGATTT 660
Query 681 ATTCTGAAATCAGGTTTTGGAGAAAGGAACTCTGTTGGGAATTCTCTGGTGGCGTTTTAT 740
||||| ||||||||||||||||||||||||||||| ||||||||| |||| || ||||||
Sbjct 661 ATTCTTAAATCAGGTTTTGGAGAAAGGAACTCTGTGGGGAATTCTTTGGTTGCATTTTAT 720
Query 741 TTGAAGAATCAGAGAGTTGATAGTGCACGTAAGGTGTTTGATGAAATGACTGAGAGAGAT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGAAGAATCAGAGAGTTGATAGTGCACGTAAGGTGTTTGATGAAATGACTGAGAGAGAT 780
Query 801 GTTATATCTTGGAATTCTATTATTAATGGGTATGTATCAAACGGATTAGCTGAGAAAGGG 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTTATATCTTGGAATTCTATTATTAATGGGTATGTATCAAACGGATTAGCTGAGAAAGGG 840
Query 861 CTATCTGTTTTCGTGCAGATGTTATTTTCAGGGATTGAGATTGATTTGGCTACTATAGTT 920
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 841 CTATCTGTTTTCGTGCAGATGTTGGTTTCAGGGATAGAGATTGATTTGGCTACTATAGTT 900
Query 921 AGTGTTTTTGCTGGCTGTGCTGATTCTCGTTTGATCTCCTTAGGTAGAGCTGTCCACT-G 979
|||||||||||||| |||||||||||||||||||| || |||||||||||||| || | |
Sbjct 901 AGTGTTTTTGCTGGTTGTGCTGATTCTCGTTTGATATCGTTAGGTAGAGCTGTTCA-TAG 959
Query 980 TTTTGGAGTGAAAGCTTGTTTTAGTAGAGAGGATAGGTTTTGTAATACATTGCTTGATAT 1039
| |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 960 TATTGGAGTGAAAGCTTGTTTTAGTAGAGAAGATCGGTTTTGTAATACATTGCTTGATAT 1019
Query 1040 GTATTCGAAATGTGGTGATCTAGACTCTGCTAAAGTTGTGTTTAGTGAGATGAGTGGTCG 1099
||||||||| ||||||||||| || |||||||||| ||||||||| |||||||||| |||
Sbjct 1020 GTATTCGAAGTGTGGTGATCTTGATTCTGCTAAAGCTGTGTTTAGGGAGATGAGTGATCG 1079
Query 1100 AAGTGTTGTGTCGTATACTTCCATGATTGCTGGTTATGCTAGGGAAGGTTTGGCTGGTGA 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 AAGTGTTGTGTCGTATACTTCCATGATTGCTGGTTATGCTAGGGAAGGTTTGGCTGGTGA 1139
Query 1160 AGCTGTGAAGTTATTTGAAGAAATGGAGGAAGAAGGTATTAGCCCTGATGTTTATACCGT 1219
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1140 AGCTGTAAAGTTGTTTGAAGAAATGGAGGAAGAAGGTATTAGTCCTGATGTTTATACCGT 1199
Query 1220 GACTGCGGTTTTAAACTGCTGTGCCCGTAATCGGTTGTTAGACGAAGGCAAGCGTGTGCA 1279
||||| |||||||| || ||||| ||| ||||||||||||| |||||||||||||||||
Sbjct 1200 CACTGCTGTTTTAAATTGTTGTGCTCGTTATCGGTTGTTAGATGAAGGCAAGCGTGTGCA 1259
Query 1280 TGAGTGGATAAAGGAAAGCGATATGGGATTTGATATCTTTGTATCGAATGCTTTGATGGA 1339
||||||||||||||||| |||| |||||||||||||||||||||| |||||| |||||||
Sbjct 1260 TGAGTGGATAAAGGAAAACGATTTGGGATTTGATATCTTTGTATCAAATGCTCTGATGGA 1319
Query 1340 TATGTATGCGAAATGTGGAAGCATGCGAGAGGCGGAGATAGTGTTCTCTGAGATGCGTGT 1399
||||||||| |||||||||||||||| |||||||||| |||| |||||||||||||||||
Sbjct 1320 TATGTATGCAAAATGTGGAAGCATGCAAGAGGCGGAGCTAGTCTTCTCTGAGATGCGTGT 1379
Query 1400 GAAAGATATTATCTCGTGGAACACCATTATTGGTGGGTACTCAAAGAATTGTTACGCCAA 1459
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1380 GAAAGATATCATCTCGTGGAACACCATTATTGGTGGGTACTCAAAGAACTGTTACGCCAA 1439
Query 1460 TGAAGCTCTAAGCCTGTTCAATTTGCTGTTGGAGGAAAAGCGATTTAGTCCTGATGAGAG 1519
|||||||||||||||||| |||||||||||||| |||||| | |||||||||||||||||
Sbjct 1440 TGAAGCTCTAAGCCTGTTTAATTTGCTGTTGGAAGAAAAGAGGTTTAGTCCTGATGAGAG 1499
Query 1520 AACAGTGGCATGCGTTCTTCCAGCTTGTGCAAGTCTTTCTGCTTTCGATAAAGGCAGAGA 1579
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1500 AACAGTGGCGTGTGTTCTTCCGGCTTGTGCAAGTCTTTCTGCTTTCGATAAAGGCAGAGA 1559
Query 1580 GATCCACGGTTACATCATGAGAAACGGTTATTTCTCAGATCGGCATGTTGCTAATTCGCT 1639
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1560 AATCCACGGTTACATCATGAGAAACGGGTATTTCTCAGATCGGCATGTTGCTAATTCGCT 1619
Query 1640 TGTAGACATGTACGCGAAATGTGGAGCGTTGTTACTCGCACGGT-TGCTCTTTGATGATA 1698
|||||||||||||||||||||||| |||||||||||||| | | |||||||||||||||
Sbjct 1620 TGTAGACATGTACGCGAAATGTGGTGCGTTGTTACTCGCTCA-TATGCTCTTTGATGATA 1678
Query 1699 TTACTTCCAAGGATCTTGTTTCTTGGACAGTGATGATAGCTGGATATGGGATGCACGGAT 1758
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 TTGCTTCCAAGGATCTTGTTTCTTGGACAGTGATGATAGCTGGATATGGGATGCACGGGT 1738
Query 1759 TTGGAAAAGAGGCGATTGCTCTTTTTAATCAAATGAGACAAGCGGGTATTGAGCCTGACG 1818
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
Sbjct 1739 TTGGAAAAGAGGCGATTGCTCTTTTCAATCAAATGAGACAAGCGGGTATTGAGGCTGATG 1798
Query 1819 AAATATCTTTTGTATCTTTGTTGTATGCTTGTAGCCATTCAGGACTAGTGGATGAAGGAT 1878
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1799 AAATATCCTTTGTATCTTTGTTGTATGCTTGTAGCCATTCAGGACTAGTTGATGAAGGAT 1858
Query 1879 GGAGATTCTTTAACATCATGAGACATGAATGCAAGATCGAGCCAACAGTAGAACATTATG 1938
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1859 GGAGATTCTTTAACATCATGAGACATGAATGCAAGATCGAGCCAACGGTGGAACATTATG 1918
Query 1939 CCTGTATAGTCGACATGCTTGCAAGAACCGGAAACTTG-TCAAAAGCCTATAGGTTCATC 1997
| |||||||| ||||||||||||||||| ||| | || ||||| || ||||||||||||
Sbjct 1919 CTTGTATAGTTGACATGCTTGCAAGAACTGGAGATTTAATCAAA-GCTTATAGGTTCATC 1977
Query 1998 GAGAACATGCCAATTCCGCCAGATGCTACAATCTGGGGAGCTTTGCTGTGTGGATGCAGG 2057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GAGAACATGCCAATTCCGCCAGATGCTACAATCTGGGGAGCTTTGCTGTGTGGATGCAGG 2037
Query 2058 ATACATCATGATGTTAAGCTAGCTGAGAGAGTCGCAGAGAAAGTCTTTGAGCTTGAACCA 2117
|||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2038 ATACATCATGATGTTAAGTTAGCTGAGAAAGTTGCAGAGAAAGTCTTTGAGCTTGAACCA 2097
Query 2118 GAAAACACAGGATATTATGTACTCATGGCGAATATCTACGCAGAAGCTGAGAAATGGGAA 2177
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2098 GAGAACACAGGATATTATGTACTCATGGCAAATATCTACGCAGAAGCTGAGAAATGGGAA 2157
Query 2178 GAAGTGAAAAGGCTAAGAAAGAGGATAGGGCAACGCGGATTGAGGAAGAATCCGGGATGT 2237
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2158 CAAGTGAAAAGGCTAAGAAAGAGGATAGGGCAGCGCGGATTGAGGAAGAATCCGGGATGT 2217
Query 2238 AGCTGGATAGAGATAAAGGGTAGAGTTAACATCTTTGTTGCTGGAGATAGTTCAAATCCA 2297
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 2218 AGCTGGATAGAGATAAAGGGTAGAGTTAACATCTTTGTAGCTGGAGATAGTTCAAACCCG 2277
Query 2298 GAAACCGAAAAGATTGAAGCTTTCTTGAGGGGGGTAAGAGCTAGAATGATAGAAGAAGGG 2357
||||| ||||| ||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2278 GAAACTGAAAACATTGAAGCTTTTTTGAGAAAGGTAAGAGCTAGAATGATAGAAGAAGGA 2337
Query 2358 TATTCGCCGCTGACTAAATACGCTTTAATCGATGCGGAAGAGATGGAAAAAGAAGAAGCT 2417
||||| || ||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2338 TATTCACCACTGACGAAATACGCTTTGATCGATGCGGAAGAGATGGAAAAGGAAGAAGCT 2397
Query 2418 TTGTGTGGTCATAGTGAGAAATTAGCAATGGCTCTAGGGATT-ATTAGCTCTGGACATGG 2476
|| |||||||||||||||||||||||||||||| | |||| | || ||||||||||||||
Sbjct 2398 TTATGTGGTCATAGTGAGAAATTAGCAATGGCTTT-GGGAATCATAAGCTCTGGACATGG 2456
Query 2477 AAAGATCATTAGAGTTACCAAGAATCTAAGAGTTTGTGGAGATTGTCATGAAATGGCCAA 2536
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 AAAGATCATAAGAGTTACAAAGAATCTAAGAGTTTGTGGAGATTGTCATGAAATGGCCAA 2516
Query 2537 GTTCATGTCTAAGTTAACCAGAAGAGAGATTGTCCTAAGAGATTCAAACCGGTTTCACCA 2596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 GTTCATGTCTAAGTTAACCAGAAGAGAGATTGTCCTAAGAGATTCAAACCGGTTTCACCA 2576
Query 2597 ATTTAAAGATGGACATTGTTCTTGCAGAGGTTTTTGGTGAACATTGAACTGTTTCATGTA 2656
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2577 ATTTAAAGATGGACATTGTTCTTGCAGAGGTTTCTGGTGAACATTGAACTGTTTCATGTA 2636
> AT3G22690.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Protein
of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide
repeat (InterPro:IPR002885); BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like superfamily
protein (TAIR:AT2G29760.1); Has 49784 Blast hits to
14716 proteins in 280 species: Archae - 2; Bacteria - 10;
Metazoa - 107; Fungi - 167; Plants - 48594; Viruses - 0; Other
Eukaryotes - 904 (source: NCBI BLink). | chr3:8021229-8024534
REVERSE LENGTH=2935
Length=2935
Score = 87.9 bits (47), Expect = 5e-16
Identities = 58/63 (92%), Gaps = 1/63 (2%)
Strand=Plus/Plus
Query 752 GAGAG-TTGATAGTGCACGTAAGGTGTTTGATGAAATGACTGAGAGAGATGTTATATCTT 810
||||| |||||||||||||||||||||||||||||||| |||||||| ||||| | ||||
Sbjct 548 GAGAGCTTGATAGTGCACGTAAGGTGTTTGATGAAATGTCTGAGAGAAATGTTGTTTCTT 607
Query 811 GGA 813
|||
Sbjct 608 GGA 610
> AT3G16610.1 | Symbols: | pentatricopeptide (PPR) repeat-containing
protein | chr3:5656371-5658335 REVERSE LENGTH=1965
Length=1965
Score = 65.8 bits (35), Expect = 2e-09
Identities = 37/38 (97%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1839 TTGTATGCTTGTAGCCATTCAGGACTAGTGGATGAAGG 1876
|||| |||||||||||||||||||||||||||||||||
Sbjct 1549 TTGTCTGCTTGTAGCCATTCAGGACTAGTGGATGAAGG 1586
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131989227033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5