BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946318
Length=608
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B | chr4:1... 1033 0.0
AT5G45775.2 | Symbols: | Ribosomal L5P family protein | chr5:1... 784 0.0
AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:2... 584 3e-166
> AT4G18730.1 | Symbols: RPL16B | ribosomal protein L16B | chr4:10302163-10303382
FORWARD LENGTH=800
Length=800
Score = 1033 bits (559), Expect = 0.0
Identities = 595/612 (97%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 1 TTTACTCATCTCCTTCGATTTCGAACTCCTAATCTTGAGATGGCGTCGGAGAAGAAGCTC 60
||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 37 TTTGCTCATCTCCTTCGATTTCGAACCCCTAATCTTGAGATGGCATCGGAGAAGAAGCTC 96
Query 61 TCGAACCCTATGAGGGATATTAAGGTTCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAG 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 97 TCGAACCCTATGAGGGATATTAAGGTCCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAG 156
Query 121 AGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 157 AGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAGACTCCT 216
Query 181 GTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAAAAGATT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 217 GTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTCGGTATCAGGCGTAATGAAAAGATT 276
Query 241 GCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 GCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAA 336
Query 301 GTGAAGGAATACGAGCTGTTGAGGAGGAACTTCAGTGACACTGGCTGCTTTGGATTCGGT 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 337 GTGAAGGAATACGAGCTGTTGAGGAGGAACTTCAGTGACACTGGCTGCTTCGGATTCGGT 396
Query 361 ATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 ATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATG 456
Query 421 GATTTCTACGTTGTTCTTGAACGCCCGGGATACCGTGTTGCCCGTCGCCGTAGATGCAAG 480
||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||
Sbjct 457 GATTTCTACGTTGTTCTTGAACGTCCAGGATACCGTGTGGCCCGTCGCCGTAGATGCAAG 516
Query 481 GCTCGTGTTGGTATTCAACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTT 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 ACTCGCGTTGGTATTCAACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTT 576
Query 541 AAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTGAAGAG-ttttttt 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 577 AAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACATCACTGGTTGAAGAGCTTTTTTT 636
Query 600 ---CATTTTGTT 608
|||||||||
Sbjct 637 TGTCATTTTGTT 648
> AT5G45775.2 | Symbols: | Ribosomal L5P family protein | chr5:18565062-18566569
REVERSE LENGTH=841
Length=841
Score = 784 bits (424), Expect = 0.0
Identities = 516/561 (92%), Gaps = 4/561 (1%)
Strand=Plus/Plus
Query 40 ATGGCGTCGGAGAAGAAGCTCTCGAACCCTATGAGGGATATTAAGGTTCAGAAGCTAGTT 99
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 74 ATGGCGTCGGAGAAGAAGCTCTCGAACCCCATGAGGGACATTAAGGTTCAGAAACTTGTT 133
Query 100 CTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAA 159
|| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 134 CTCAACATTTCCGTTGGTGAGAGTGGTGATCGTCTCACTCGTGCCTCCAAGGTGTTGGAG 193
Query 160 CAGCTCAGTGGTCAAACCCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGT 219
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CAGCTCAGTGGACAAACCCCTGTCTTCTCTAAGGCGAGGTACACTGTGAGGTCTTTTGGT 253
Query 220 ATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTGAGAGGTGAGAAGGCAATGCAG 279
|||||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 254 ATCAGGCGTAATGAGAAGATTGCGTGTTATGTGACTGTGAGAGGTGAGAAGGCAATGCAG 313
Query 280 CTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG-TTGAGGAGGAACTTCAGTGA 338
|||||||||||||| |||||||| ||||| || ||||| || |||||||||||||||||
Sbjct 314 CTTCTTGAGAGTGGTTTGAAAGTTAAGGAGTATGAGCTTCTT-AGGAGGAACTTCAGTGA 372
Query 339 CACTGGCTGCTTTGGATTCGGTATCCAGGAGCACATTGATCTTGGAATCAAGTATGATCC 398
|||||| ||||||||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 373 CACTGGTTGCTTTGGATTTGGTATCCAAGAGCACATTGATCTTGGAATCAAGTACGATCC 432
Query 399 TTCTACCGGTATCTACGGTATGGA-TTTCTACGTTGTTCTTGAACGCCCGGGATACCGTG 457
||| || ||||||||||| ||||| ||| |||||||| ||||||||||| ||||| ||||
Sbjct 433 TTCCACTGGTATCTACGGAATGGACTTT-TACGTTGTCCTTGAACGCCCAGGATATCGTG 491
Query 458 TTGCCCGTCGCCGTAGATGCAAGGCTCGTGTTGGTATTCAACATAGAGTTACCAAGGATG 517
| || || ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||
Sbjct 492 TGGCTCGCCGCCGTAGATGCAAGACTCGTGTTGGTATTCAACACAGAGTAACCAAGGATG 551
Query 518 ATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 577
|||| ||||| |||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 552 ATGCAATGAAATGGTTCCAGGTCAAGTATGAAGGAGTTATCCTCAACAAGTCTCAGAACA 611
Query 578 TCACTGGTTGAAGAGtttttt 598
||||||||| || ||| ||||
Sbjct 612 TCACTGGTTAAAAAGTGTTTT 632
> AT3G58700.1 | Symbols: | Ribosomal L5P family protein | chr3:21711563-21712955
FORWARD LENGTH=786
Length=786
Score = 584 bits (316), Expect = 3e-166
Identities = 486/569 (85%), Gaps = 7/569 (1%)
Strand=Plus/Plus
Query 21 TCG-AACTCCTAATCTTGAGATGGCGTCGGAGAAGAAGCTCTCGAACCCTATGAGGGATA 79
||| ||| ||||||| || |||||||||||||||||||| |||||||| |||||||| |
Sbjct 81 TCGCAAC-CCTAATC-CGAAATGGCGTCGGAGAAGAAGCTATCGAACCCAATGAGGGACA 138
Query 80 TTAAGGTTCAGAAGCTAGTTCTTAACATCTCTGTTGGTGAGAGTGGTGATCGTCTCACTC 139
|||| || |||||||| ||||| |||||||| |||||||||||||| ||||||||||| |
Sbjct 139 TTAAAGTGCAGAAGCTGGTTCTCAACATCTCCGTTGGTGAGAGTGGAGATCGTCTCAC-C 197
Query 140 -GTGCCTCCAAGGTGTTGGAACAGCTCAGTGGTCAAACCCCTGTCTTCTCTAAGGCGAGG 198
| |||||||||||||||||||| | |||||||| || ||||| ||||| ||||| |
Sbjct 198 AGAGCCTCCAAGGTGTTGGAACAATTGAGTGGTCAGACTCCTGTTTTCTCCAAGGCTCGA 257
Query 199 TACACTGTGAGGTCTTTTGGTATCAGGCGTAATGAAAAGATTGCGTGCTATGTCACCGTG 258
|||||||| | ||||||||||| || |||||||| |||||||| |||||||| || ||
Sbjct 258 TACACTGTTCGTTCTTTTGGTATAAGACGTAATGAGAAGATTGCTTGCTATGTGACTGTC 317
Query 259 AGAGGTGAGAAGGCAATGCAGCTTCTTGAGAGTGGCTTGAAAGTGAAGGAATACGAGCTG 318
|| || ||||||||||||||||| ||||||||||| |||||||| || |||||||| ||
Sbjct 318 AGGGGAGAGAAGGCAATGCAGCTCCTTGAGAGTGGATTGAAAGTTAAAGAATACGAACTC 377
Query 319 TTGAGGAGGAACTTCAGTGACACTGGCTGCTTTGGATTCGGTATCCAGGAGCACATTGAT 378
||||| ||||||||||| |||||||| |||||||| || ||||| || ||||||||||||
Sbjct 378 TTGAGAAGGAACTTCAGCGACACTGGTTGCTTTGGTTTTGGTATTCAAGAGCACATTGAT 437
Query 379 CTT-GGAATCAAGTATGATCCTTCTACCGGTATCTACGGTATGGATTTCTACGTTGTTCT 437
|| || |||||||||||||| || || || |||||||| ||||| ||||| ||||||||
Sbjct 438 -TTGGGTATCAAGTATGATCCATCGACTGGAATCTACGGCATGGACTTCTATGTTGTTCT 496
Query 438 TGAACGCCCGGGATACCGTGTTGCCCGTCGCCGTAGATGCAAGGCTCGTGTTGGTATTCA 497
||| || || || ||||||||||| || ||| | ||||||||| |||||||||| || ||
Sbjct 497 TGAGCGACCAGGTTACCGTGTTGCGCGCCGCAGAAGATGCAAGACTCGTGTTGGAATCCA 556
Query 498 ACATAGAGTTACCAAGGATGATGCCATGAAGTGGTTCCAAGTTAAGTATGAAGGAGTTAT 557
|||||||| || || |||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 557 GCATAGAGTGACGAAAGATGATGCCATGAAATGGTTCCAGGTGAAATATGAAGGAGTCAT 616
Query 558 CCTCAACAAGTCTCAGAACATCACTGGTT 586
||||||||||||||||||||||||||||
Sbjct 617 TCTCAACAAGTCTCAGAACATCACTGGTT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29286507701
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5