BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946319
Length=1184
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18710.1 | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protei... 1988 0.0
AT5G42323.1 | Symbols: | Pseudogene of AT1G06390; GSK1 (GSK3/S... 302 7e-81
> AT4G18710.1 | Symbols: BIN2, DWF12, UCU1, ATSK21, SK21 | Protein
kinase superfamily protein | chr4:10296273-10299362 FORWARD
LENGTH=1793
Length=1793
Score = 1988 bits (1076), Expect = 0.0
Identities = 1149/1185 (97%), Gaps = 1/1185 (0%)
Strand=Plus/Plus
Query 1 CTCTCTGTGTCTCTATAGCCATGGCTGATGATAAGGAGATGCCTGCTGCTGTAGTTGATG 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 CTCTCTGTGTCTCTATCGCCATGGCTGATGATAAGGAGATGCCTGCTGCTGTAGTTGATG 241
Query 61 GACATGATCAAGTCACTGGTCATATAATTTCCACCACAATCGGTGGCAAAAATGGTGAAC 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 242 GACATGATCAAGTCACTGGTCATATTATTTCCACCACAATCGGTGGCAAAAATGGTGAAC 301
Query 121 CAAAACAGACTATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGAATCG 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 302 CAAAACAGACAATTAGTTACATGGCGGAGCGAGTTGTTGGTACAGGCTCGTTCGGGATCG 361
Query 181 TTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGAAGGTTTTGCAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 362 TTTTCCAAGCAAAATGTTTGGAGACTGGAGAAACCGTGGCGATAAAGAAGGTTTTGCAAG 421
Query 241 ACAGAAGATACAAGAACCGAGAACTTCAGTTGATGCGTGTGATGGATCATCCGAATGTGG 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATAGAAGATACAAGAACCGAGAACTTCAGTTGATGCGTGTGATGGATCATCCGAATGTGG 481
Query 301 TTTGTTTGAAGCATTGCTTCTTTTCGACAACAAGTAAAGACGAGCTTTTCCTGAATTTGG 360
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct 482 TTTGTTTGAAGCATTGCTTCTTTTCGACTACAAGTAAAGACGAGCTTTTCTTGAACTTGG 541
Query 361 TTATGGAGTATGTTCCTGAGAGCTTGTATCGAGTTCTGAAACACTATAGCAGTGCTAACC 420
||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| ||||
Sbjct 542 TTATGGAGTATGTCCCTGAGAGCTTGTATCGAGTTCTGAAACATTATAGTAGTGCAAACC 601
Query 421 AAAGAATGCCTCTTGTCTATGTTAAACTTTACATGTACCAGATCTTCCGGGGGCTTGCTT 480
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 602 AAAGAATGCCTCTTGTCTATGTTAAACTTTACATGTATCAGATCTTCCGGGGACTTGCTT 661
Query 481 ACATTCACAATGTTGCTGGAGTTTGTCACAGAGATCTAAAGCCTCAAAATCTTCTGGTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 ACATTCACAATGTTGCTGGAGTTTGTCACAGAGATCTAAAGCCTCAAAATCTTCTGGTTG 721
Query 541 ATCCTCTTACTCACCAAGTCAAGATCTGTGACTTTGGCAGTGCGAAACAGCTCGTTAAAG 600
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 722 ATCCTCTTACTCATCAAGTCAAAATCTGTGACTTTGGCAGTGCGAAACAGCTCGTTAAAG 781
Query 601 GTGAAGCCAATATTTCTTACATCTGTTCACGATTCTACCGTGCACCTGAGCTCATATTTG 660
|||||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 782 GTGAAGCCAACATTTCTTACATCTGCTCACGATTCTACCGTGCACCCGAGCTCATATTTG 841
Query 661 GTGCCACTGAGTACACAACTTCTATTGATATCTGGTCTGCTGGTTGTGTTCTTGCCGAGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 842 GTGCCACTGAGTACACAACTTCTATTGATATCTGGTCTGCTGGTTGTGTTCTTGCTGAGC 901
Query 721 TTCTTCTCGGTCAGCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATAA 780
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 902 TTCTTCTTGGTCAGCCATTATTTCCCGGAGAAAATGCTGTGGATCAGCTCGTTGAAATTA 961
Query 781 TAAAAGTTCTTGGTACACCAACTCGAGAAGAAATACGTTGTATGAATCCACATTACACAG 840
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 962 TAAAAGTTCTTGGTACACCAACTCGAGAAGAAATCCGTTGTATGAATCCACATTACACAG 1021
Query 841 ATTTCAGGTTTCCACAGATAAAGGCACATCCGTGGCACAAGATCTTCCACAAAAGGATGC 900
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1022 ATTTCAGGTTTCCACAGATAAAGGCACATCCCTGGCACAAGATCTTCCACAAAAGGATGC 1081
Query 901 CTCCAGAAGCTATTGATTTTGCATCGAGGCTGCTTCAATACTCTCCAAGTCTTAGATGCA 960
| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1082 CCCCAGAAGCGATTGATTTTGCATCAAGGCTGCTTCAATACTCTCCAAGTCTAAGATGCA 1141
Query 961 CAGCACTCGAAGCTTGTGCCCATCCGTTCTTTGATGAACTGAGAGAACCAAACGCTCGTT 1020
|||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1142 CAGCGCTCGAAGCTTGTGCACATCCGTTCTTTGATGAACTCAGAGAACCAAACGCTCGTT 1201
Query 1021 TACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAGAAGTAGCTGGAGCAT 1080
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1202 TACCAAATGGACGGCCTTTCCCGCCTCTCTTCAACTTCAAACAAGAAGTAGCTGGATCAT 1261
Query 1081 CACCTGAACTGGTCAACAAGTTGATTCCAGACCATATCAAGAGACAATTGGGTCTAAGTT 1140
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1262 CACCTGAACTGGTCAACAAGTTGATTCCAGACCATATCAAGAGACAATTGGGTCTAAGCT 1321
Query 1141 TCTTGAATCAATCTGGAACATAAAAGG-ATTCTGCAAAAGACAAC 1184
||||||||||||||||||| ||||||| || ||||||||||||||
Sbjct 1322 TCTTGAATCAATCTGGAACTTAAAAGGGATCCTGCAAAAGACAAC 1366
> AT5G42323.1 | Symbols: | Pseudogene of AT1G06390; GSK1 (GSK3/SHAGGY-LIKE
PROTEIN KINASE 1); kinase | chr5:16923171-16923748
REVERSE LENGTH=494
Length=494
Score = 302 bits (163), Expect = 7e-81
Identities = 190/203 (94%), Gaps = 2/203 (1%)
Strand=Plus/Plus
Query 923 ATCGAGGCTGCTTCAATACTCTCCAAGTCTTAGATGCACAGCA-CTCGAAGCTTGTGCCC 981
||||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||| |
Sbjct 290 ATCGAGGCTGCTTCAATACTCTCCAAGTCTTAGATCCACAG-AGCTCGGAGCTTGTGCAC 348
Query 982 ATCCGTTCTTTGATGAACTGAGAGAACCAAACGCTCGTTTACCAAATGGACGGCCTTTCC 1041
||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||||
Sbjct 349 ATCCGTTCTTTCATGAACTGAGAGAACCAAACGCTCGTTAACTAAATGGAAGGCCTTTCC 408
Query 1042 CGCCTCTCTTCAACTTCAAACAAGAAGTAGCTGGAGCATCACCTGAACTGGTCAACAAGT 1101
| ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||
Sbjct 409 CACCTCTCTTCAACTTCAAACAAGAAGTAGCTGGAGCCTCACTTGAACTAGTCAACAAGT 468
Query 1102 TGATTCCAGACCATATCAAGAGA 1124
|||||||||||||||||||||||
Sbjct 469 TGATTCCAGACCATATCAAGAGA 491
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58132231110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5