BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946320
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18700.1 | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-intera... 2392 0.0
AT5G45810.1 | Symbols: CIPK19, SnRK3.5 | CBL-interacting protei... 1098 0.0
> AT4G18700.1 | Symbols: CIPK12, SnRK3.9, ATWL4, WL4 | CBL-interacting
protein kinase 12 | chr4:10288798-10290850 REVERSE LENGTH=2053
Length=2053
Score = 2392 bits (1295), Expect = 0.0
Identities = 1460/1535 (95%), Gaps = 29/1535 (2%)
Strand=Plus/Plus
Query 7 AACTTTCTTCATCAATGGCGGAGAAAATCACAAGAGAAACGTCTTTACCTAAAGAGAGAA 66
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||
Sbjct 258 AACTTTCTTCATCAATGGCGGAGAAAATCACGAGAGAGACGTCGTTACCTAAAGAGAGAA 317
Query 67 GCAGCCCACAAGCTCTAATCCTCGGGA-GATACGAAATGGGTAAGCTTCTCGGCCATGGA 125
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 318 GCAGCCCACAAGCTCTAATCCT-GGGACGATACGAAATGGGTAAGCTTCTCGGCCATGGT 376
Query 126 ACTTTCGCTAAGGTTTATCTCGCACGTAACGTGAAATCAGGA-GAAAGCGTAGCAATCAA 184
|| |||||||| ||||| |||||||||||||||||| || | |||||||||||||||||
Sbjct 377 ACCTTCGCTAAAGTTTACCTCGCACGTAACGTGAAAACA-AACGAAAGCGTAGCAATCAA 435
Query 185 AGTAATCGACAAAGAGAAAGTTCTCAAAGGAGGTTTAATCGCTCACATCAAACGCGAGAT 244
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 436 AGTAATCGACAAGGAGAAAGTTCTCAAAGGAGGTTTAATCGCACACATCAAACGCGAGAT 495
Query 245 CTCGATTCTCCGACGTGTTCGTCATCCAAACATTGTTCAGCTATTCGAAGTCATGGCGAC 304
||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 496 CTCGATTCTTCGACGTGTTCGTCACCCAAACATCGTTCAGCTATTCGAAGTCATGGCGAC 555
Query 305 GAAAGCGAAGATCTATTTCGTGATGGAATATGTTCGTGGAGGTGAGTTGTTCAATAAAGT 364
|||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 556 GAAAGCTAAGATCTATTTCGTGATGGAGTATGTTCGTGGAGGTGAGTTATTCAATAAAGT 615
Query 365 AGCTAAAGGTCGTCTTAAAGAAGAAGTAGCTCGGAAATATTTCCAGCAATTGATCTCTGC 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 616 AGCTAAAGGTCGTCTTAAAGAAGAAGTAGCTCGCAAATATTTCCAGCAATTGATCTCTGC 675
Query 425 TGTTACTTTCTGTCACGCGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTTTT 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGTTACTTTCTGTCACGCGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTTTT 735
Query 485 GCTT-GATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATC 543
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 G-TTAGATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATC 794
Query 544 AGATTCGTCAAGATGGGCTTTTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 AGATTCGTCAAGATGGGCTTTTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTG 854
Query 604 AGGTTTTAGCGAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTTA 663
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGGTTTTAGCTAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTTA 914
Query 664 TCTTGTTTGTGTTGATGGCTGGTTATTTGCCTTTTCATGATCGGAATGTTATGGCTATGT 723
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 915 TCTTGTTTGTGTTGATGGCTGGTTATTTGCCGTTTCATGATCGGAATGTTATGGCTATGT 974
Query 724 ATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTGCTGAGCTTACGA 783
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 975 ATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTACTGAGCTTACCA 1034
Query 784 GGTTGTTGTCGAAGCTTTTGGAGACGAATCCGGAGAAACGGTTTACTTTCCCTGAGATTA 843
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1035 GGTTGTTGTCGAAGCTTTTGGAGACGAATCCGGAGAAACGGTTCACTTTCCCTGAGATTA 1094
Query 844 TGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGGATGATA 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGGATGATA 1154
Query 904 AGTTATGTAATGTTGTTGATGATGATGAATTGGAGTCTGA--------A-TCGGATAGAG 954
|||| |||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 1155 AGTTGTGTAATGTTGTTGATGATGATGAACTGGAGTCTGACTCGGTGGAGTCGGATAGAG 1214
Query 955 ATTCCGCGGTTTCTGAATCGGAGATTGAGTATTTGGAGCCTAGAAGGAGAGTTGGGGGGT 1014
||||||||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1215 ATTCCGCGGCTTCTGAGTCGGAGATTGAGTATTTGGAGCCTAGGAGGAGAGTTGGAGGGT 1274
Query 1015 TGCCTAGACCTGCGAGTTTGAATGCTTTCGATATCATATCGTTTTCGCAAGGGTTTGATT 1074
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1275 TGCCTAGACCTGCGAGTTTGAATGCTTTCGATATTATATCGTTTTCGCAAGGTTTTGATT 1334
Query 1075 TATCGGGGTTGTTTGATGACGATGGGGAGGGTTCTAGGTTTGTTTCGGGAGCTCCGGTTT 1134
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TATCGGGTTTGTTTGATGACGATGGGGAGGGTTCTAGGTTTGTTTCGGGAGCTCCGGTTT 1394
Query 1135 CGAAGATTATATCGAAGTTGGAAGAGATTGCTAAAGTTGTGAGCTTTACGGTGAGGAAGA 1194
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1395 CGAAGATTATATCGAAGTTGGAAGAGATTGCTAAAGTTGTGAGCTTTACTGTGAGGAAGA 1454
Query 1195 AGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAGGAGTGAAAGGTCCATTGACGATTG 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 AGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAGGAGTGAAAGGTCCATTGACGATTG 1514
Query 1255 CAGCAGAGATATTCGAGTTGACACCATCGTTGGTTGTTGTGGAAGTCAAGAAGAAAGGAG 1314
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 CAGCAGAGATATTCGAATTGACACCATCGTTGGTTGTTGTGGAAGTCAAGAAGAAAGGAG 1574
Query 1315 GAGATAAAACAGAGTATGAAGAGTTT-TGTAACAACGAATTGAAACCCAAGTTGCAAAAT 1373
|||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 1575 GAGATAAAACAGAGTATGAAGA-TTTCTGTAACAATGAATTGAAACCCAAGTTGCAAAAC 1633
Query 1374 TTGACAGCTGATGATGTAGTAGCTGAGCCTGTAACGGTTTCTGCGGTTGATGAAACTGAA 1433
|||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1634 TTGACAGCTGATGATGTAGTAGCTGAGCCTGTCGCGGTTTCAGCGGTTGATGAAAC---- 1689
Query 1434 ACCGCGATCGCGGATTCTCCA-CCGGTATGTTTCTTGCCTTCTGACACTGAATAGAAG-A 1491
| || ||| || |||||||| || | | ||||||||| |||||||||||||||||| |
Sbjct 1690 -C-GCTATCCCGAATTCTCCAACCATT-TCTTTCTTGCCGTCTGACACTGAATAGAAGGA 1746
Query 1492 CTTGA---AAGACCACAAAGCCAGAGATCATGAGG 1523
||||| |||||||||||||||||||||||||||
Sbjct 1747 CTTGATGGAAGACCACAAAGCCAGAGATCATGAGG 1781
Score = 233 bits (126), Expect = 3e-60
Identities = 130/132 (98%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 1530 GTTAGAGAAATTGAGTTATGTTTTCTACTAACCTTTTAGCAGtttttttttGTAATGGGA 1589
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1908 GTTAGAGAAATTGAGTTATGTTTTTTACTAACCTTTTAGCAGTTTTTTTTTGTAATGGGA 1967
Query 1590 GAATTGTAAACAGTTTCACATAATCAGATCTTTGATATGTATAAAAACAATGAAATAAAT 1649
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 GAATTGTAAACAGTTTCGCATAATCAGATCTTTGATATGTATAAAAACAATGAAATAAAT 2027
Query 1650 AAAAGAAAGTTC 1661
||||||||||||
Sbjct 2028 AAAAGAAAGTTC 2039
> AT5G45810.1 | Symbols: CIPK19, SnRK3.5 | CBL-interacting protein
kinase 19 | chr5:18584942-18586393 FORWARD LENGTH=1452
Length=1452
Score = 1098 bits (594), Expect = 0.0
Identities = 1103/1342 (82%), Gaps = 62/1342 (5%)
Strand=Plus/Plus
Query 75 CAAGCTCTAATCCTCGGGAGATACGAAATGGGTAAGCTTCTCGGCCATGGAACTTTCGCT 134
|||||||| ||||| || | |||||||||||||| |||||| ||||| ||||| ||||||
Sbjct 61 CAAGCTCTGATCCTTGGCAAATACGAAATGGGTAGGCTTCTTGGCCACGGAACCTTCGCT 120
Query 135 AAGGTTTATCTCGCACGTAACG-TGAAATCAGGAGAAAGCGTAGCAATCAAAGTAATCGA 193
|| || ||||||||||| |||| | |||| |||||||||||||| ||||| ||||| ||
Sbjct 121 AAAGTCTATCTCGCACGAAACGCT-CAATCTGGAGAAAGCGTAGCGATCAAGGTAATTGA 179
Query 194 CAAAGAGAAAGTTCTCAAAGGAGGTTTAATCGCTCACATCAAACGCGAGATCTCGATTC- 252
||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||
Sbjct 180 CAAAGAGAAAGTTCTCAAATCCGGTTTAATCGCACACATCAAACGCGAGATCTCGA-TCT 238
Query 253 TCCGACGTGTTCGTCATCCAAACATTGTTCAGCTATTCGAAGTCATGGCGACGAAAGCGA 312
| || |||||||||||||| ||||| |||||||||||||||||||||||||||||| | |
Sbjct 239 TGCGCCGTGTTCGTCATCCTAACATCGTTCAGCTATTCGAAGTCATGGCGACGAAATCTA 298
Query 313 AGATCTATTTCGTGATGGAATATGTTCGTGGAGGTGAGTTGTTCAATAAAGTAGCTAAAG 372
||||||||||||| |||||||||||| |||||||| |||||||| || ||||||||||
Sbjct 299 AGATCTATTTCGTAATGGAATATGTTAAAGGAGGTGAATTGTTCAACAAGGTAGCTAAAG 358
Query 373 G-TCGTCTTAAAGAAGAAGTAGCTCGGAAATATTTCCAGCAATTGATCTCTGCTGTTA-C 430
| || | ||||||||| | || || |||||||| || || |||||||| || | || |
Sbjct 359 GAAGGT-TAAAAGAAGAAATGGCACGTAAATATTTTCAACAGTTGATCTCAGCCG-TATC 416
Query 431 -TTTCTGTCAC-GCGAGAGGTGTTTATCATAGAGATCTGAAACCTGAGAATCTT-TTGCT 487
||| |||||| | | |||||||||||| ||||| ||||||| ||||||||| || |
Sbjct 417 GTTT-TGTCACTTC-CGTGGTGTTTATCATCGAGATTTGAAACCGGAGAATCTTCTT--T 472
Query 488 T-GATGAGAATGGTAATCTTAAAGTCTCTGACTTTGGACTTAGTGCTGTCTCTGATCAGA 546
| || || ||||| || || ||||||||||| ||||| ||||||||||| ||||||||||
Sbjct 473 TAGACGAAAATGGAAACCTAAAAGTCTCTGATTTTGGTCTTAGTGCTGTTTCTGATCAGA 532
Query 547 TTCGTCAAGATGGGCTT-TTTCATACGTTTTGTGGTACTCCTGCTTATGTTGCTCCTGAG 605
|||| ||||||||| || |||||||| |||||||| || |||||||| || || || |||
Sbjct 533 TTCGACAAGATGGG-TTATTTCATACTTTTTGTGGGACCCCTGCTTACGTGGCACCGGAG 591
Query 606 GTT-TTAGCGAGGAAAGGTTATGATGCTGCTAAAGTTGATATTTGGTCTTGTGGTGTTAT 664
||| || || ||||||| || |||| |||||||| ||||||||||||||||| || ||
Sbjct 592 GTTCTT-GCTCGGAAAGGCTACGATGGAGCTAAAGTCGATATTTGGTCTTGTGGAGTGAT 650
Query 665 CTTGTTTGTGTTGATGGC-TGGTTAT-TTGCCTTTTCATGATCGGAATGTTATGGCTATG 722
|||||||||||| ||||| |||| | || ||||||||||||||||||||||||||||||
Sbjct 651 CTTGTTTGTGTTAATGGCAGGGTT-TCTT-CCTTTTCATGATCGGAATGTTATGGCTATG 708
Query 723 TATAAGAAGATTTACAGAGGGGAGTTTAGGTGTCCTAGGTGGTTTTCTGCTGAGCTTA-C 781
|||||||||||||||||||| || ||||||||||| || |||||| | | |||| ||| |
Sbjct 709 TATAAGAAGATTTACAGAGGAGATTTTAGGTGTCCGAGATGGTTTCCGGTTGAGATTAAC 768
Query 782 GAGGTTGTTG-T-CGAAGCTTTTGGAGACGAATCCGGAGAAACGGTTTACTTTCCCTGAG 839
|||| ||| | |||| | |||||||| || ||||||| ||||||||| | || ||
Sbjct 769 C-GGTTATTGATTCGAA--TGTTGGAGACTAAACCGGAGAGACGGTTTACAATGCCGGAT 825
Query 840 ATTATGGAGAATTCTTGGTTTAAGAAAGGGTTTAAGCATATTAAGTTTTATGTGGAGGAT 899
|||||||||| | |||||| |||||||| ||||||||||||||||||||||| || |||
Sbjct 826 ATTATGGAGACTAGTTGGTTCAAGAAAGGTTTTAAGCATATTAAGTTTTATGTTGAAGAT 885
Query 900 GAT-A--AG-TTATGTAATGTTGTTGATGATGATGA-ATTGGAGTC--T-GAATCGGATA 951
||| | || || ||||| |||| |||||||||||| || | | || | ||||||| |
Sbjct 886 GATCATCAGCTT-TGTAACGTTGCTGATGATGATGAGATCGAA-TCGATTGAATCGGTTT 943
Query 952 -GAG-AT-TC--CG-CGGTTTCTGAATCGGA-GA-TT-GAGTATTTGGA-GCCTAGAAGG 1001
| | | || | ||||||||||| |||| || || |||| ||| || | || ||
Sbjct 944 CGGGGAGGTCTTCTACGGTTTCTGAACCGGAAGACTTCGAGTCTTTTGATGGG-AGGAGA 1002
Query 1002 AGAGTTGGGGGGTTGCCTAGACCTGCGAGTTTGAATGCTTTCGATATCATATCGTTTTCG 1061
|||| ||| | |||||||||| || |||||||||||||||||| |||| |||||||||
Sbjct 1003 AGAGGTGGTTCGATGCCTAGACCGGCAAGTTTGAATGCTTTCGATCTCATTTCGTTTTCG 1062
Query 1062 CAAGGGTTTGAT-TTATCGGGGTTGTTTGATGACGATGGGGAGGGTTCTAGGTTTGTTTC 1120
| ||| |||||| || ||||| |||||||| || ||||| || || ||||||||||| ||
Sbjct 1063 CCAGGTTTTGATCTT-TCGGGTTTGTTTGAGGATGATGGTGAAGGATCTAGGTTTGTGTC 1121
Query 1121 GGGAGCTCCGGTT--TCGAAGATTATATCGAAGTTGGAAGAGATTGCTAA-AGTTGTGAG 1177
|| ||||| ||| || | ||| || || |||||||| || || || | | |||||||
Sbjct 1122 TGGTGCTCCTGTTGGTC-A-GATCATTTCTAAGTTGGAGGAAATCGCGAGGA-TTGTGAG 1178
Query 1178 CTTTACGGTGAGGAAGAAGGATTGTAGGGTAAGTCTTGAAGGTTCAAGACAAGGA-GT-- 1234
||||| ||| | ||||||||||||| || |||||||||||||||||| ||||| ||
Sbjct 1179 TTTTACTGTGCGAAAGAAGGATTGTAAAGTGAGTCTTGAAGGTTCAAGAGAAGGAAGTAT 1238
Query 1235 GAAAGGTCCATTGACGATTGCAGCAGAGATATTCGAGTTGACACCATCGTTGGTTGTTGT 1294
||||||||||||| | ||||| || |||||||| || |||||||| | |||||||||||
Sbjct 1239 GAAAGGTCCATTGTCAATTGCTGCTGAGATATTTGAACTGACACCAGCTTTGGTTGTTGT 1298
Query 1295 GGAAGTCAAGAAGAAAGGAGGAGATAAAACAGAGTATGAAGAGTTTTGTAACAACGAATT 1354
||||| |||||||||||||| ||||||| |||||||| ||||||||||| || || ||
Sbjct 1299 TGAAGTGAAGAAGAAAGGAGGTGATAAAATGGAGTATGATGAGTTTTGTAATAAGGAGTT 1358
Query 1355 GAAACCCAAGTTGCAAAATTTG 1376
|||||| |||||||| ||||||
Sbjct 1359 GAAACCTAAGTTGCAGAATTTG 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82178292165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5