BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946328
Length=2076
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinas... 3291 0.0
AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase fa... 804 0.0
> AT4G18640.1 | Symbols: MRH1 | Leucine-rich repeat protein kinase
family protein | chr4:10259678-10263764 FORWARD LENGTH=2861
Length=2861
Score = 3291 bits (1782), Expect = 0.0
Identities = 1985/2082 (95%), Gaps = 17/2082 (1%)
Strand=Plus/Plus
Query 7 GTTGT-AAAAACCTTATAATGATGGGTTGTGGATTTCGCTTCCCTTGGTTCTTCTTCTTG 65
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 620 GTTGTAAAAAACCTTATAATGATGGGTTGTGGATTTCACTTCCCTTGGTTCTTCTTCTTG 679
Query 66 ATCATTGGCCTTCAAGCTCCTCTCTCATTGTCCCTCACTTCCCAAGGATCCGCATTGTTG 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 ATCATTGGCCTTCAAGCTCCTCTCTCATTGTCCCTCACTTCCCAAGGATCCGCATTGTTG 739
Query 126 AAATTCCGGGCAAGAGTGAACTCGGATCCTCATGGGACTCTTGCAAATTGGAATGTTTCT 185
|| |||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 740 AAGTTCCGGGCAAGAGTCAACTCAGATCCTCATGGGACTCTTGCGAATTGGAATGTTTCT 799
Query 186 GG---TAATGATCTCTGCTTTTGGTCAGGGGTTACTTGTGTTGACGGTAAAGTGCAGATT 242
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 800 GGTATTAATGATCTCTGCTATTGGTCAGGGGTTACTTGTGTTGACGGTAAAGTGCAGATT 859
Query 243 CTGGATCTTAGCGGATGTTCCTTGGAAGGAACGTTAGCTCCTGAGCTTAGCCAATTGAGT 302
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 860 CTGGATCTTAGCGGATATTCTTTGGAAGGAACGTTAGCTCCTGAGCTTAGCCAATTGAGT 919
Query 303 GATTTAAGATCTCTAATACTCTCTAGGAACCATTTCTCCGGTGGAATTCCAAAGGAGTAT 362
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 920 GACTTAAGATCTCTAATACTCTCTCGGAACCATTTCTCCGGTGGAATTCCAAAGGAGTAT 979
Query 363 GGGAGTTTCGAAAACTTGGAAGTATTGGATTTGAGAAATAATGATTTGAGCGGACAAATT 422
||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||
Sbjct 980 GGGAGTTTCGAAAACTTGGAAGTCCTGGATTTGAGAGAGAATGATTTGAGCGGACAAATT 1039
Query 423 CCGCTTGAGCTAAGCGATGACTTGT--CTAACAAACACTTGTTGCTTTCTGGTAACAAAT 480
|| | |||||||||| ||| ||| | || | ||||||||||||||||||||||||||||
Sbjct 1040 CCACCTGAGCTAAGCAATGGCTTATCGCT-A-AAACACTTGTTGCTTTCTGGTAACAAAT 1097
Query 481 TTT-TGAGTGATACGAGAATAAAGATCGTGAGACTTCAATCGTCCTATGAAG-TCTGGTT 538
||| || ||||| ||||||||||||||||||||||||||| || ||||||| || ||||
Sbjct 1098 TTTCGGA-TGATATGAGAATAAAGATCGTGAGACTTCAATCTTCGTATGAAGTTC-GGTT 1155
Query 539 AAAGAATAGTCCAAAGTTATCACCTTTGGCTGTTCTCGGCTGTATTAACAGAAAACTTGG 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 AAAGAAGAGTCCAAAGTTATCACCTTTGGCTGTTCTCGGCTGTATTAACAGAAAACTTGG 1215
Query 599 ACATTGTGTTTCAAGAAACCGAATCATTCGAGTAAAAAAGGTAGAAGCTATTGTATTCCG 658
||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1216 ACACTGTGTTTCAAGAAACCGTATCATTCAAGTAAAAAAGGTAGAAGCTATTGTATTCCG 1275
Query 659 GATCAAAGCAACCTCCAGACGTTTCTTGAAAGCATTCCCTAGCTTTTTGGAGCAAACTGA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1276 GATCAAAGCAACCTCCAGACGTTTCTTGAAAGCATTCCCTAGCTTTTTGGAGGAAACTGA 1335
Query 719 TATCTTCAAACGACGTGAGTTACTCGAGGAGTCAAGTAATTTGGAGGCTGAGCCTGCTCC 778
||||| ||||||||||||| ||||||||||| |||||||||| | |||||||||||||||
Sbjct 1336 TATCTACAAACGACGTGAGCTACTCGAGGAGACAAGTAATTTAGCGGCTGAGCCTGCTCC 1395
Query 779 TTCCGCTCCTAGTCCTTCTCCCGAGATTATAACTGAAGCTTCCCCTCGAAGCAGCGGGTC 838
||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1396 TTCAGCTCCTAGTCCTTCTCCCGGGATTATAACTGAAGCTTCACCTCGAAGCAGCGGGTC 1455
Query 839 TTTCCCTGCAGTAAGCAATGCAAAGAAGAGAAGACCGCCTTTACACCCTCCTTTACCTTC 898
|||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||||
Sbjct 1456 TTTCCCTGCAGTAACCAATGCAAAGAAGAGAAGACCACCTTTAGTCCCTCCTGTACCTTC 1515
Query 899 TCCTGATAA--G-AACACTAGTCTTGATATCTCTAAGAATCAGCCACAAGATAATAAACA 955
||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1516 TCCTGATAAGGGCAGTACTAGTCCTGATATCTCTAAGAATCAGCCACAAGATAATAAACA 1575
Query 956 GTCAAAAGGATCAAAACATGTATGGCTGTATGTGATTATCGCCGTTTCTTCTTTCGTCGG 1015
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||
Sbjct 1576 GTCAAAAGGATCAAAACATGTATGGCTGTATGTGGTTATCGCGGTTGCTTCTTTCGTCGG 1635
Query 1016 TTTACTGATTATAGTAGCGGTTATCTTCTTCTGCCGAAAAAGAGCCGTAAAGAGCATAGG 1075
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1636 TTTACTGATTATAGTAGCGGTTATCTTCTTCTGCCGGAAAAGAGCTGTCAAGAGCATAGG 1695
Query 1076 TCCTTGGAAAACTGGTCTTAGTGGACAATTGCAGAAAGCTTTTGTTACCGGGGTACCAAA 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1696 TCCTTGGAAAACTGGTCTTAGTGGACAATTGCAGAAAGCTTTTGTTACCGGGGTACCAAA 1755
Query 1136 GCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAGGATTTCAGCAACATTATAAAGACATT 1195
||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||
Sbjct 1756 GCTCAATCGGTCTGAGCTTGAAACAGCGTGTGAAGATTTCAGCAACATCATAGAGACATT 1815
Query 1196 TGACGGTTACACTGTGTATAAAGGAACATTGTCGAGTGGTGTTGAGATAGCGGTAGCTTC 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 TGACGGTTACACTGTGTATAAAGGAACATTGTCGAGTGGTGTTGAGATAGCGGTAGCTTC 1875
Query 1256 AACCGCGATTGCTGAATCTAAAGAATGGACAAGGGCCATGGAAATGGCATACCGTAGAAA 1315
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1876 AACCGCGATTGCTGAATCTAAAGAATGGACAAGAGCCATGGAAATGGCATACCGTAGAAA 1935
Query 1316 GATTGATGCAT-TATCACGGATCAACCATAAAAACTTTGTGAATCTGATTGGATACTGCG 1374
||||||| | | | ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1936 GATTGATAC-TCTGTCACGGATCAACCATAAGAACTTTGTGAATCTGATTGGATACTGCG 1994
Query 1375 AAGAAGATGATCCTTTTAATAGGATGATGGTCTTTGAATATGCTCCAAATGGAACTCTTT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1995 AAGAAGATGATCCTTTTAATAGGATGATGGTCTTTGAATATGCTCCAAATGGAACTCTTT 2054
Query 1435 TCGAACATTTGCACGATAAGGAGACAGAGCATCTTGATTGGAGCGCACGGATGAGAATAA 1494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2055 TCGAACATTTGCACGATAAGGAGACAGAGCATCTTGATTGGAGCGCACGGATGAGAATAA 2114
Query 1495 TAATGGGAACGGCTTACTGTCTACAACATATGCACGCGATGAACCCGCCTATGGCTCATA 1554
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 2115 TAATGGGAACGGCTTACTGTCTTCAACATATGCACGGGATGAACCCGCCTATGGCTCATA 2174
Query 1555 CGGACTTCAACTCATCGGAAATCTACCTAACCGATGACTACGCAGCCAAGGTCTCGGAGA 1614
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2175 CGGACTTCAATTCATCGGAAATCTACCTAACCGATGACTACGCAGCCAAGGTCTCGGAGA 2234
Query 1615 TTCCATTCAACTTAGAGGCAAGATTAAATCCGAAGAAACATGTGAGTGGTGACTTAGAGC 1674
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2235 TTCCATTCAACTTAGAGGCAAGATTAAATCCGAAGAAACACGTGAGTGGAGACTTAGAGC 2294
Query 1675 AAACGTCATTGCTACTACCTCCAGAACCAGAGGCTAACGTCCATAGCTTCGGAGTCTTAA 1734
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 2295 AAACGTCATTGTTACTACCTCCAGAACCGGAGGCTAACGTCCATAGCTTCGGAGTCCTGA 2354
Query 1735 TGCTCGAAATAATCTCCGGAAAGCTCTCTTTCTCAGACGATTACGGATCTATAGAGCAAT 1794
|||||||||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2355 TGCTCGAAATCATCTCTGGAAAGCTCTCTTTCTCAGACGAATACGGATCTATCGAGCAAT 2414
Query 1795 GGGCTTCAAAGTACCTTGAAAACGACGAATTAGGAGAGATGATAGATCCATCGTTAAAGA 1854
|||| || |||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 2415 GGGCATCGAAGTACCTTGAAAAAGACGACTTGGGAGAGATGATAGATCCATCGTTAAAGA 2474
Query 1855 CATTCAAAGAAGAAGAGCTTGAAGTGATCTGCGATGTGATACGAGAATGTCTGAAAACAG 1914
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475 CATTCAAAGAAGAGGAGCTTGAAGTGATCTGCGATGTGATACGAGAATGTCTGAAAACAG 2534
Query 1915 AACAGAGACATCGACCTTCGATGAAAGATGTAGCGGAACAACTAAAACAAGTTATCAACA 1974
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2535 AACAGAGACAACGACCTTCAATGAAAGATGTAGCGGAACAACTGAAACAAGTTATCAACA 2594
Query 1975 TAACTCCTGAAAAAGCTACTCCAAGATCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCT 2034
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2595 TAACTCCTGAGAAAGCTACTCCAAGATCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCT 2654
Query 2035 TGTCCTCTGAAGCTACTTGACCAATCAGAGGTTTCTCCTATT 2076
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2655 TGTCCTCTGAAGCTACTTGACCAATCAGAGGTTTCTCCTATT 2696
> AT5G45840.2 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:18593917-18597995 REVERSE LENGTH=2675
Length=2675
Score = 804 bits (435), Expect = 0.0
Identities = 1086/1390 (78%), Gaps = 85/1390 (6%)
Strand=Plus/Plus
Query 712 AAACTGA-TATCTTCAAACGACGTGAGTTACTCGAGGAGTCAAGTAATTTGGAGGCTGA- 769
||||| | |||||||||| ||||||||||||||||||| |||| ||||| | |||| |
Sbjct 1167 AAACT-AGTATCTTCAAAAGACGTGAGTTACTCGAGGAAACAAGCAATTTAGCGGCT-AT 1224
Query 770 GCCTGCTCCT--TCCGCTCCTAGTCCTTCTCCCGAGATTATAACTGA-AGCT-TCCCCTC 825
|||||| ||| | ||| || ||||||||||| |||||||||||| | || | | ||||
Sbjct 1225 GCCTGCGCCTGATACGC-CC-AGTCCTTCTCCTGAGATTATAACT-ATAG-TGTTTCCTC 1280
Query 826 GAAGCAGCGGGTC-TTTCCCTGCAGTAAGC-AATGCAAAGAAGAGAAGACCGCC-TTTAC 882
||||||||||||| ||| || ||| ||| | |||||||||||||||| ||| || || |
Sbjct 1281 GAAGCAGCGGGTCGTTT-CCAGCATTAA-CTAATGCAAAGAAGAGAATACCTCCATTGA- 1337
Query 883 ACCCTCC-T-TT-ACCTTCTCCTGATAAGAACACTAGTCTTGA-TATCTCTAAG-AAT-C 936
|||||| | || ||| ||||| || || | | | | ||| || || || |
Sbjct 1338 TCCCTCCTTCTTCTCCTCCTCCT-CTACCTAC-C-A-ACAACACCATCGCT-AGTGATCC 1392
Query 937 AGCC-A-CAAGA-T--AATAAACAGTCAAAAGGATCAAAACATGTATGGCTGTATG-TGA 990
| || | || | | || ||| | || ||||| | || | || ||| |||||| ||
Sbjct 1393 A-CCGAGGAA-ATTCGAAGAAA-AATCGAAAGGGTTTAAGGACGTTTGGTTGTATGTTG- 1448
Query 991 TTATCGCCGTTTCTTCTTTCGTCG-GTTTACTGATTATAGTAGCGGTTATCTTCTTCTGC 1049
| |||| ||| || ||||||| | | | ||||| |||||||||||||| ||||||| |
Sbjct 1449 TGATCGGTGTTGCTGCTTTCGTAGCG-ATGCTGATAATAGTAGCGGTTATATTCTTCTTC 1507
Query 1050 CGAAAAAGAGCCGTAAAGAGCATAGGTCCTTGGAAAACTGGTCTT-AGTGGACAATTGCA 1108
|| |||||||| || ||||| |||||||| ||||| |||||| || ||||||||||||||
Sbjct 1508 CGGAAAAGAGCTGTGAAGAGTATAGGTCCATGGAAGACTGGT-TTGAGTGGACAATTGCA 1566
Query 1109 GAAAGCTTTTGTTACCGGGGTACCAAAGCTCAATCGGTCTGAGCTTGAAACAGCGTGTGA 1168
||||||||||||||| || ||||| ||||| || |||||||| || |||||||| |||||
Sbjct 1567 GAAAGCTTTTGTTACTGGTGTACCTAAGCTAAACCGGTCTGAACTAGAAACAGCCTGTGA 1626
Query 1169 GGATTTCAGCAACATTA-TAAAGACATTTGACGGTTACACTGTGTATAAAGGAACATTGT 1227
|||||||| || || | | ||| ||||||| ||||||||||| ||||||||||| ||||
Sbjct 1627 AGATTTCAGTAATATCATTGAAG-CATTTGATGGTTACACTGTCTATAAAGGAACTTTGT 1685
Query 1228 CGAGTGGTGTTGAGATAGCGGTAGCTTCAACCGCGATTGCT-GAATCTAAAGAATGGACA 1286
| ||||| |||||||| ||||| ||||||||||| ||| | ||| ||| |||||||||
Sbjct 1686 CCAGTGGCGTTGAGATTGCGGTTGCTTCAACCGCCATT-TTGGAAACTAGGGAATGGACA 1744
Query 1287 AGGGCCATGGAAATGGCATACCGTAGAAAGATTGATGCATTATCACGGA-TCAACCATAA 1345
|| || ||||||||| | ||||| |||| ||||||| || | ||| || ||||||||||
Sbjct 1745 AGAGCTATGGAAATGACTTACCGCAGAAGGATTGATACAATGTCA-AGAGTCAACCATAA 1803
Query 1346 AAACTTTGTGAATCTGATTGGATACTGCGAAGAAGATGATCCTTTTAATAGGATGATGGT 1405
|||||| | ||||||||||| || |||||||||||||| || |||||||||||||||||
Sbjct 1804 GAACTTTATTAATCTGATTGGTTATTGCGAAGAAGATGAACCGTTTAATAGGATGATGGT 1863
Query 1406 CTTT-GAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCACGATAAGGAGACAGAGC 1464
||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||
Sbjct 1864 -TTTCGAATATGCTCCAAATGGAACTCTTTTCGAACATTTGCATGATAAGGAAATGGAGC 1922
Query 1465 ATCTTGATTGGAGCGC-ACGGATGAGAATAATAATGGGAACGGCTTACTGTCTACAACAT 1523
|||||||||||| ||| | ||| ||| |||||||||||||| ||||| ||||| ||| ||
Sbjct 1923 ATCTTGATTGGAACGCGA-GGACGAGGATAATAATGGGAACTGCTTATTGTCTGCAATAT 1981
Query 1524 ATGCACGCGATGAACCCGCCTATGGCTCATACGGA-CTTCAACTCATCGGAAATCTACCT 1582
||||||| | | || || || || | || || | ||| |||||| | ||| ||| |
Sbjct 1982 ATGCACGAGCTCAATCCTCCAATCTCACACACTAAACTTGT-CTCATCAGCAATATACTT 2040
Query 1583 AACCGATGACTACGCAGCCAAGGTCTCGGAGA--TTCCATTCAACTTAGAGGCAAG-ATT 1639
||||||||| |||||||| |||||| ||||| |||| |||| | | | | | | |
Sbjct 2041 AACCGATGATTACGCAGCAAAGGTC--GGAGAGGTTCCTTTCAGCGGACAAACCGGGAGT 2098
Query 1640 AAATCCGAAGAAA-CATG-TGAGTGGTGACTTAGAGCAAACGTCATTGCTACTACCTCCA 1697
||| |||| |||| | | |||||||||| ||||| ||| | | ||||| | |||||||
Sbjct 2099 AAA-CCGA-GAAAACC-GATGAGTGGTGATTTAGACCAATCTTTATTGCCATTACCTCCT 2155
Query 1698 GAACCAGAGGCTAACGTCCATAGCTTCGGAGTCTTAATGCTCGAAATAATCTCCGGAAAG 1757
||||||||| |||| ||| ||||||| ||||| |||||||| || |||||||| ||||||
Sbjct 2156 GAACCAGAGACTAATGTCTATAGCTTTGGAGTATTAATGCTTGAGATAATCTCTGGAAAG 2215
Query 1758 CTCTCTT-TCTCAGACGATTACGGATCTATAG-AGCAATGGGCTTCAAAGTACCTTGAAA 1815
||||| | ||||| || | ||||| || | ||||||| |||||||| || || |
Sbjct 2216 CTCTCAGAT-TCAGAAGAAGAAGGATCAATTCTAA-AATGGGCGTCAAAGTATCTGGAGA 2273
Query 1816 ACGACGAATTAG-GAGAGATGATAGATCC-ATCGTTAA-AGACAT-TCAAAGAAGAAGAG 1871
| || |||| | |||| ||||| ||||| | | ||| | || | | |||||||||||
Sbjct 2274 ATGAT-AATTTGAGAGATATGATTGATCCTA-CACTAACA-ACGTAT-AAAGAAGAAGAA 2329
Query 1872 CTTGAAG-TGATCTGCGATGTGATACGAGAATGTCTGAAAACA-GAAC-AGAGACATCGA 1928
||||||| | || || || ||| |||| | ||||||||| | || | | || || ||
Sbjct 2330 CTTGAAGCT-ATATGTGACGTGGCACGACATTGTCTGAAA-CTTGA-CGAAAGCCAAAGA 2386
Query 1929 CCTTCGATGAAAGATGTAGCGGAACAACTAAAACAAGTTATCAACATAACTCCTGAAAAA 1988
|| |||||| |||| | ||||| | ||| |||| || |||||| ||| ||| ||
Sbjct 2387 CCAAAAATGAAATATGTGGTTCAACAATTGAAAGAAGTAATAAACATATCTCAAGAACAA 2446
Query 1989 GCTACTCCAAGA-TCCTCTCCTCTTTGGTGGGCAGAGCTCGAAATCTTGTCCTCTGAAGC 2047
|| || |||||| || ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 2447 GCAACACCAAGACTC-TCTCCTCTTTGGTGGGCAGAGCTTGAGATCTTATCCTCTGAAGC 2505
Query 2048 TACTTGACCA 2057
||| | ||||
Sbjct 2506 TACATAACCA 2515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102911117250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5