BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946330

Length=535
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18620.1 | Symbols: PYL13, RCAR7 | PYR1-like 13 | chr4:10254...   787    0.0  


> AT4G18620.1 | Symbols: PYL13, RCAR7 | PYR1-like 13 | chr4:10254359-10254853 
FORWARD LENGTH=495
Length=495

 Score =  787 bits (426),  Expect = 0.0
 Identities = 469/490 (96%), Gaps = 2/490 (0%)
 Strand=Plus/Plus

Query  21   atggaaagttctaagcaaaaaCGATGTCACTCTAGCGTAGTCGAGACCATCGAAGCACCA  80
            |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  1    ATGGAAAGTTCTAAGCAAAAACGATGTCGCTCTAGCGTAGTCGAGACCATTGAAGCACCA  60

Query  81   TTACCACTAGTGTGGTCAATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC  140
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TTACCACTAGTGTGGTCCATCCTACGTAGTTTCGACAAACCACAAGCTTATCAACGTTTC  120

Query  141  GTCAAAAGTTGCACCATGCGCTCCAGTGGCGGTGGCGGCAAAGGAGGAGAAGGAAAAGGC  200
            |||||||||||||||||||||||  | ||||| |||||||||||||||||||||||||||
Sbjct  121  GTCAAAAGTTGCACCATGCGCTCTGGCGGCGGCGGCGGCAAAGGAGGAGAAGGAAAAGGC  180

Query  201  TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  181  TCCGTCCGGGACGTGACGTTAGTCTCCGGCTTCCCGGCGGATTTCAGCACGGAGAGGCTC  240

Query  261  GAAGAGCTAGACGATGAGTCTCACGTGATGGTGATAAGTATCATTGGCGGTAACCATAGA  320
            ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||| 
Sbjct  241  GAAGAGCTAGATGATGAGTCTCACGTGATGGTGGTAAGTATTATTGGCGGTAACCATAGG  300

Query  321  CTTGTTAATTACAAATCGAAAACGACGGTGGTCGCGTCGCCCGAGGATGTGACAGAGAAG  380
            ||||||||||||||||||||||||| ||||||||||||||| |||||| || || |||||
Sbjct  301  CTTGTTAATTACAAATCGAAAACGAAGGTGGTCGCGTCGCCGGAGGATATGGCAAAGAAG  360

Query  381  ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAAATAGCGAAGAAGATACG  440
            ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| 
Sbjct  361  ACGGTGGTGGTGGAGAGTTACGTGGTGGATGTGCCGGAAGGAACTAGCGAGGAAGATAC-  419

Query  441  AA-ATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA  499
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  AATATTTTTTGTTGATAACATTATTCGGTATAACCTTACTTCACTTGCTAAGCTCACAAA  479

Query  500  GAAGATGATG  509
            ||| ||||||
Sbjct  480  GAAAATGATG  489



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25619414970


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5