BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg946331 Length=619 Score E Sequences producing significant alignments: (Bits) Value AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF6... 1044 0.0 AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF6... 93.5 2e-18 > AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF640) | chr4:10250698-10251542 FORWARD LENGTH=845 Length=845 Score = 1044 bits (565), Expect = 0.0 Identities = 602/620 (97%), Gaps = 2/620 (0%) Strand=Plus/Plus Query 1 AAATTAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 77 AAATCAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 136 Query 61 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAGCCGCAGCAAC 120 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 137 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAACCGCAGCAAC 196 Query 121 CACTCAGCCGCTACGAATCGCAGAAACGCCGCGATTGGAACACGTTCATCCAATACCTAA 180 ||||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 197 CACTCAGCCGCTATGAATCGCAGAAACGCCGCGACTGGAACACGTTCGTCCAATACCTAA 256 Query 181 AATCACAAAATCCACCGTTGATGATGTCTCAGTTCGACTACACGCACGTGCTAAGTTTCC 240 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 257 AATCACAAAATCCACCGTTGATGATGTCTCAATTCGACTACACGCACGTGCTAAGTTTCC 316 Query 241 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 317 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 376 Query 301 GACAACCCGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 360 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 377 GACAACCGGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 436 Query 361 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATG 420 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 437 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATA 496 Query 421 CTAACCCGTTTGCAAACGGGTCTATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 480 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 497 CTAACCCGTTTGCAAACGGGTCGATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 556 Query 481 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAGAGGAGGAAGACTAAAAACGACGTCG 540 |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| Sbjct 557 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAAAGGAGGAAGACTAAAAACGAGGTCG 616 Query 541 TTGTTATCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTCCACTTGATAA- 599 ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 617 TTGTTGTCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTTCACTTGATAAA 676 Query 600 TTAATCATATTTTAAAATTT 619 || ||||||| ||||||| Sbjct 677 TTTATCATATAA-AAAATTT 695 > AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF640) | chr1:29631743-29632745 REVERSE LENGTH=1003 Length=1003 Score = 93.5 bits (50), Expect = 2e-18 Identities = 207/280 (74%), Gaps = 21/280 (8%) Strand=Plus/Plus Query 255 CAGTTTGGTAAGACCAAA-GTACATCAT-CAAGCTTGTGTCTTCTTCGGACAACCCGATC 312 |||||||| |||| |||| || ||| || || | || || ||||||||||| || | Sbjct 348 CAGTTTGGGAAGA-CAAAGGTTCAT-ATCCATGGATGCGTTTTCTTCGGACAGGTTGAGC 405 Query 313 CACCAGGTCCGTG-CACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATC 371 || | || | ||| || |||||| | |||||||| ||||| || |||||||||||||| Sbjct 406 CAGCGGGACAGTGTAAC-TGTCCTTTAAAACAAGCGTGGGGGAGTTTAGATGCTTTGATC 464 Query 372 GGACGGCTAAGAGCTGCTTACGAGGA-ACACGGTGGCGGGTCACCTGATGCTAA-CCCGT 429 |||||||||||||| |||| |||||| | |||| || | | | || | || ||| | Sbjct 465 GGACGGCTAAGAGCGGCTTTCGAGGAGA-ACGGAGGATTG-C-CG-GA-GAGAAACCCTT 519 Query 430 TTGCAAACGG-GTCTATCCGGGTTCA-CTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGC 487 |||| ||| | || ||||| || ||||||||||||||| || || || ||||| Sbjct 520 TTGCCGGCGGCGGA-ATTAGGGTTTTTCT-GAGGGAAGTGAGAGATTCACAGGCGAAGGC 577 Query 488 TCGTGG-GATTCCGTACAGGAAGAAGAAGAG-GAGGAAGA 525 | || | ||||||||| ||| ||||| | |||||||| Sbjct 578 AAGAGGAG-TTCCGTACAAGAA-AAGAAAAAAGAGGAAGA 615 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29839083318 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5