BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946331
Length=619
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF6... 1044 0.0
AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF6... 93.5 2e-18
> AT4G18610.1 | Symbols: LSH9 | Protein of unknown function (DUF640)
| chr4:10250698-10251542 FORWARD LENGTH=845
Length=845
Score = 1044 bits (565), Expect = 0.0
Identities = 602/620 (97%), Gaps = 2/620 (0%)
Strand=Plus/Plus
Query 1 AAATTAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 AAATCAGAATTCCCCTAATAATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGG 136
Query 61 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAGCCGCAGCAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 137 ATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAACCGCAGCAAC 196
Query 121 CACTCAGCCGCTACGAATCGCAGAAACGCCGCGATTGGAACACGTTCATCCAATACCTAA 180
||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 197 CACTCAGCCGCTATGAATCGCAGAAACGCCGCGACTGGAACACGTTCGTCCAATACCTAA 256
Query 181 AATCACAAAATCCACCGTTGATGATGTCTCAGTTCGACTACACGCACGTGCTAAGTTTCC 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 257 AATCACAAAATCCACCGTTGATGATGTCTCAATTCGACTACACGCACGTGCTAAGTTTCC 316
Query 241 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 TAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCG 376
Query 301 GACAACCCGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 GACAACCGGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAG 436
Query 361 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATG 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATA 496
Query 421 CTAACCCGTTTGCAAACGGGTCTATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 497 CTAACCCGTTTGCAAACGGGTCGATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAG 556
Query 481 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAGAGGAGGAAGACTAAAAACGACGTCG 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 557 CCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAAAGGAGGAAGACTAAAAACGAGGTCG 616
Query 541 TTGTTATCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTCCACTTGATAA- 599
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 617 TTGTTGTCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTTCACTTGATAAA 676
Query 600 TTAATCATATTTTAAAATTT 619
|| ||||||| |||||||
Sbjct 677 TTTATCATATAA-AAAATTT 695
> AT1G78815.1 | Symbols: LSH7 | Protein of unknown function (DUF640)
| chr1:29631743-29632745 REVERSE LENGTH=1003
Length=1003
Score = 93.5 bits (50), Expect = 2e-18
Identities = 207/280 (74%), Gaps = 21/280 (8%)
Strand=Plus/Plus
Query 255 CAGTTTGGTAAGACCAAA-GTACATCAT-CAAGCTTGTGTCTTCTTCGGACAACCCGATC 312
|||||||| |||| |||| || ||| || || | || || ||||||||||| || |
Sbjct 348 CAGTTTGGGAAGA-CAAAGGTTCAT-ATCCATGGATGCGTTTTCTTCGGACAGGTTGAGC 405
Query 313 CACCAGGTCCGTG-CACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATC 371
|| | || | ||| || |||||| | |||||||| ||||| || ||||||||||||||
Sbjct 406 CAGCGGGACAGTGTAAC-TGTCCTTTAAAACAAGCGTGGGGGAGTTTAGATGCTTTGATC 464
Query 372 GGACGGCTAAGAGCTGCTTACGAGGA-ACACGGTGGCGGGTCACCTGATGCTAA-CCCGT 429
|||||||||||||| |||| |||||| | |||| || | | | || | || ||| |
Sbjct 465 GGACGGCTAAGAGCGGCTTTCGAGGAGA-ACGGAGGATTG-C-CG-GA-GAGAAACCCTT 519
Query 430 TTGCAAACGG-GTCTATCCGGGTTCA-CTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGC 487
|||| ||| | || ||||| || ||||||||||||||| || || || |||||
Sbjct 520 TTGCCGGCGGCGGA-ATTAGGGTTTTTCT-GAGGGAAGTGAGAGATTCACAGGCGAAGGC 577
Query 488 TCGTGG-GATTCCGTACAGGAAGAAGAAGAG-GAGGAAGA 525
| || | ||||||||| ||| ||||| | ||||||||
Sbjct 578 AAGAGGAG-TTCCGTACAAGAA-AAGAAAAAAGAGGAAGA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29839083318
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5