BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946342
Length=1894
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 2961 0.0
> AT4G18520.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:10215120-10217204 REVERSE LENGTH=2085
Length=2085
Score = 2961 bits (1603), Expect = 0.0
Identities = 1805/1903 (95%), Gaps = 12/1903 (1%)
Strand=Plus/Plus
Query 1 CTTCTTCTCTATCTCCATCGCCG---ATGTTTTCGTTATCGTTAATTCAACCGCGTCTCC 57
|||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 76 CTTCTTCTCTTTCTCCATCGCCGACAATGTTTTCGTTATCGTTAATCCAACCGCGTCTCC 135
Query 58 GTATTTCGGAGATTCCGGTAACGCAAACCTTCAAATCACCGACGATATGTTACAGTAGCG 117
| ||||| ||||||||||| || ||| ||| |||||| ||||||||||||||||||||||
Sbjct 136 GGATTTCAGAGATTCCGGTGACTCAATCCTACAAATCTCCGACGATATGTTACAGTAGCG 195
Query 118 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGGGAGATTGTCTGGGTTTCGACTAGTTT 177
||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||
Sbjct 196 ATTCAAGAACTAAGCGAGAGGAACAGAGACACGTGAGATTACCTGGGTTTCGATTAGTTT 255
Query 178 CTGGAAAGAGATCATCTTTCGATTTGGGTTTTAGTGATTTAC-AAGGAGAGAATGTGAAT 236
||||||||||| |||||||||||| ||||||||||| ||| | |||||||||||||||||
Sbjct 256 CTGGAAAGAGAGCATCTTTCGATTCGGGTTTTAGTGGTTT-CAAAGGAGAGAATGTGAAT 314
Query 237 CACGATGATTTATCTTCTTTCGATAGCGAACGAGTGGATTATGCTCTGTTAGCGGAGTGG 296
|| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 315 CAGGATGATTCGTCTTCTTTCGATAGCGAAAGAGTTGATTATGCTCTGTTAGCGGAGTGG 374
Query 297 CTACAGTCTTCTAATGGGATGCGACTTATTAAAAGGATTCACGCGATGGCGTTGAAGTGT 356
|||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 375 CTACAGTCTTCTAATGGGATGCGACTCATTAAAAGGATCCATGCGATGGCGTTGAAGTGT 434
Query 357 TTTGATGATCAAGTTATCTATTTTGGGAATAATTTGATTAGTTCTTGTGTGAGACTTGGG 416
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 435 TTTGATGATCAAGTTATCTATTTTGGGAACAATTTGATTAGTTCTTGTGTTAGACTTGGT 494
Query 417 GATTTGGTTTATGCACGTAAAGTGTTCGATAATATGCCTGACAGAAATACTGTTACTTGG 476
||||||||||||||||||||||||||||| | ||||||||| | ||||||||||||||||
Sbjct 495 GATTTGGTTTATGCACGTAAAGTGTTCGACAGTATGCCTGAGAAAAATACTGTTACTTGG 554
Query 477 ACTGCGATGATTGATGGGTATTTGAAGTTTGGTCTTGAGGATGAGGCTTTTGCACTGTTT 536
||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 555 ACTGCTATGATTGATGGGTATTTGAAGTATGGTCTTGAGGATGAGGCTTTTGCACTGTTT 614
Query 537 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GAGGATTATGTGAAGCATGGAATACGTTTTACGAACGAGAGGATGTTTGTGTGTTTGTTG 674
Query 597 AATCTGTGTAGTAGGAGATCAGAGTTTGAGCTT-GGGAGACAGGTACATGGTAATATGGT 655
|||||||||||||||||| ||||||||||| || |||||||| || ||||||||||||||
Sbjct 675 AATCTGTGTAGTAGGAGAGCAGAGTTTGAG-TTAGGGAGACAAGTTCATGGTAATATGGT 733
Query 656 GAAAGTTGGAGTGGGAAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 715
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GAAAGTTGGAGTGGGGAATCTCATTGTGGAGAGTTCTCTTGTTTATTTTTATGCGCAATG 793
Query 716 CGGTGAATTGACGAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 775
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CGGTGAATTGACAAGTGCGTTACGAGCTTTTGATATGATGGAGGAGAAAGATGTGATATC 853
Query 776 TTGGACAGCGGTTATTTCGGCTTGTTCAAGGAAAGGGCATGGGAA-TAAAGCCATTGTCA 834
|||||| || ||||| ||||| ||||| || ||||||||| |||| |||||| || | ||
Sbjct 854 TTGGACTGCTGTTATATCGGCGTGTTCGAGAAAAGGGCAT-GGAATTAAAGCTATAGGCA 912
Query 835 TGTTTATCGGAATGTTGAATCACGGGTTTTTACCTAACGAGTTTACGGTATGCAGTATTT 894
||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||
Sbjct 913 TGTTTATCGGAATGTTGAATCACTGGTTTTTGCCTAACGAGTTTACGGTGTGCAGTATTT 972
Query 895 TGAAGGCTTGTAGTGAGGAGAAAGCGATAAGATTTGGAAGGCAAGTACACAGCTTGGTGG 954
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 973 TGAAGGCTTGTAGTGAGGAGAAAGCGTTAAGATTCGGAAGGCAAGTACACAGCTTGGTTG 1032
Query 955 TTAAAAGGATGATTAAGACAGATGTTTTCGTAGGAACTTCGCTGATGGACATGTATGCTA 1014
|||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1033 TTAAGAGGATGATAAAGACAGATGTTTTTGTGGGAACTTCGCTGATGGACATGTATGCTA 1092
Query 1015 AATGCGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGCAATAGAAACACGG 1074
| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1093 AGTGTGGGGAGATTTCTGATTGCAGAAAAGTGTTTGATGGAATGAGTAATAGAAACACGG 1152
Query 1075 TCACGTGGACTTCGATTATAGCTGCACATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1134
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1153 TCACATGGACTTCGATTATAGCTGCTCATGCTCGGGAAGGTTTTGGTGAGGAAGCTATCA 1212
Query 1135 GCCTCTTTCGGGTAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1194
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 GCCTCTTCCGGATAATGAAGAGGCGGCATTTGATTGCTAACAATTTGACAGTAGTAAGCA 1272
Query 1195 TCCTTAGAGCGTGTGGATCTGTTGGGGCTTTATTGTTAGGGAAGGAACTTCATGCTCAGA 1254
| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1273 TTCTTAGAGCGTGTGGATCTGTTGGAGCTTTATTGTTGGGGAAGGAACTTCATGCACAGA 1332
Query 1255 TAATCAAGAATTCGATAGAAAAGAATGTCTATATAGGAAGTACTTTGGTTTGGCTGTATT 1314
| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1333 TTATCAAGAATTCGATCGAAAAGAATGTCTATATAGGAAGTACTTTGGTGTGGCTGTATT 1392
Query 1315 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1393 GTAAATGCGGAGAATCTCGTGACGCTTTCAATGTTCTCCAGCAATTGCCATCTAGAGATG 1452
Query 1375 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACACGAATCAGAAGCGC 1434
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1453 TGGTTTCATGGACCGCTATGATCTCTGGATGTTCGAGCTTAGGACATGAATCGGAAGCGC 1512
Query 1435 TAGACTTCTTGAAAGATATGATTCAAGAAGGTGTAGAGCCAAATCCATTTACGTACTCCT 1494
|||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||
Sbjct 1513 TAGACTTCTTGAAAGAGATGATTCAAGAAGGTGTAGAGCCAAACCCATTTACATACTCCT 1572
Query 1495 CGGCTTTAAAAGCCTGTGCGAATTCAGAATCTCTTCTAATCGGCAGATCAATCCATTCCA 1554
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1573 CGGCTTTAAAAGCTTGTGCGAATTCAGAATCTCTTCTTATCGGTAGATCAATCCATTCCA 1632
Query 1555 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCATATGT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1633 TTGCAAAGAAGAATCATGCTCTATCAAATGTCTTTGTGGGAAGTGCTTTGATTCACATGT 1692
Query 1615 ATGCAAAATGTGGATTTGTCTCAGAAGCTTTTCGGGTTTTCGACAGTATGCCTGAGAAGA 1674
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1693 ATGCAAAATGTGGATTTGTCTCGGAAGCTTTTCGGGTTTTTGACAGTATGCCTGAGAAGA 1752
Query 1675 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 ACTTGGTTTCATGGAAGGCGATGATAATGGGTTATGCGAGGAATGGGTTTTGCAGGGAAG 1812
Query 1735 CATTGAAGCTAATGTATAGAATGGAAGCAGAGGGATTTGAGGTGGATGATTATATATTTG 1794
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1813 CATTGAAGCTAATGTATAGAATGGAGGCAGAGGGATTTGAAGTTGATGATTATATATTTG 1872
Query 1795 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTG---AATCTTCTGCAA 1851
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1873 CAACAATTCTCTCTACTTGTGGAGATATTGAGCTCGATGAAGCTGTTGAATCTTCTGCAA 1932
Query 1852 CTTGTTACTTGGAGACCTCTTGATCTTTCTTCTTTAGAATCTC 1894
|||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1933 CTTGTTACTTGGAGACATCTTGATCTTTCTTCTTTAGAATCTC 1975
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93774618060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5