BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946347
Length=2155
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:10... 3397 0.0
AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,... 228 2e-58
> AT4G18465.1 | Symbols: | RNA helicase family protein | chr4:10197056-10201611
FORWARD LENGTH=2088
Length=2088
Score = 3397 bits (1839), Expect = 0.0
Identities = 2028/2115 (96%), Gaps = 29/2115 (1%)
Strand=Plus/Plus
Query 21 ATGGCGTTTTGGAAACCAGGGACCGAGAAACCTAGTTTCGAAGAGGATGGAGAAGGAGGC 80
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTTTGGAAACCAGGGACCGAGAAACCTCGTTTCGAAGAGGATGGAGAAGGAGGC 60
Query 81 ATAGTGTTCATGTCCAACAATCTCGCATCCTCTTCTTCTTCTAGTTATGGGTATGCGAAT 140
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 61 ATAGTGTTCATGTCCAACAATCTCGCATCCTCTTCTTCTTCTAGCTATGGGTATGCGAAT 120
Query 141 ATAGAGAAGCAAAGACAGAGATTGCCAGTGTACAAGTACAGGACTGAGATTTTGTATTTG 200
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 121 ATAGAGAAGCAAAGACAGAGATTGCCAGTGTACAAGTACAGAACTGAGATTCTGTATTTG 180
Query 201 GTGGAGAATCACGCTACCACCATTATCGTTGGCGAGACGGGCAGTGGAAAAACTACTCAG 260
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 GTGGAGAATCACGCTACCACCATTATCGTTGGCGAGACGGGTAGTGGTAAAACTACTCAG 240
Query 261 ATACCTCAGTACCTGAAAGAAGCTGGATGGGCTGAAGGAGGCCGAGTTATTGCTTGCACA 320
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 ATTCCTCAGTACCTGAAAGAAGCTGGGTGGGCTGAAGGAGGCCGAGTTATTGCTTGCACA 300
Query 321 CAGCCAAGACGTTTAGCTGTCCAGGCGGTTTCTGCGAGAGTGGCCGAGGAAATGGGAGTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGCCAAGACGTTTAGCTGTCCAGGCGGTTTCTGCGAGAGTGGCCGAGGAAATGGGAGTG 360
Query 381 AATCTTGGGGAGGAAGTTGGCTACACTATTCGATTTGAAGATCATACAACTTCCGGTGTG 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AATCTTGGGGAGGAAGTTGGCTACACTATTCGATTTGAAGATCATACAACTTCCGGTGTG 420
Query 441 ACTAAG-GTGAAATTTCTCACAGATGGGGTACTAATTCGAGAGATGATGGAGGATCCTCT 499
||| || || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 421 ACT-AGTGTAAAATTTCTCACAGATGGGGTACTAATTCGAGAGATGATGGAGGATCCCCT 479
Query 500 CTTGACAAAGTATAGTGTTATTATGATAGATGAAGCTCATGAGAGATCTATCTCAACTGA 559
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 CTTGACAAAGTATAGTGTTATTATGATAGATGAAGCTCATGAGAGATCTATTTCAACTGA 539
Query 560 CATTTTACTCGGTCTCTTAAAAAAGGTATCTCAGTCAAACATAGTCTTAGTTATACAACG 619
||||||| ||| || |||| | ||| | | || ||||||||
Sbjct 540 CATTTTA------CTC--------GG--TCTC--TTAAA-A-A-----AG--ATACAACG 572
Query 620 TCGTCGTCCTGAGCTACGCCTTATTATATCGTCAGCCACAATCGAAGCAAAAACAATGTT 679
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 573 TCGTCGTCCTGAGCTACGCCTGATTATATCTTCAGCCACAATCGAAGCAAAAACCATGTC 632
Query 680 CAATTTCTTTAATCCCAGCAAAAAACGCCATGCGCCAGAAGGTAGTGCCCCTGGACCAAA 739
||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 633 CAATTTCTTCAATTCCAGCAAAAAACGCCATGCGCCAGAAGGTAGTACCCCTGGACCAAA 692
Query 740 GTTAGAACCTGCAATCTTATCTGTTGAGGGCAGAGGCTTCAGTGTGAAAATTCACTATGT 799
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GTTGGAACCTGCAATCTTATCTGTTGAGGGCAGAGGCTTCAGTGTGAAAATTCACTATGT 752
Query 800 TGAGGAGCCTGTATCAGATTATATCCGATCAGTTGTTTCAACGATATTGTTGATTAATGA 859
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 753 CGAGGAGCCTGTATCAGATTATATCCGATCAGTTGTTTCAACGATACTGTTGATTAATGA 812
Query 860 GCGGGAGCCACCTGGGGATGTTCTTGTATTTCTTACTGGTCAAGAGGATATCGAAACTGC 919
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 813 ACGGGAGCCACCTGGGGATGTTCTTGTATTTCTTACTGGTCAAGAGGATATTGAAACTGC 872
Query 920 TATTAAACTTCTTGAAGAAGAAGCTCATAGCAATCAAAAGAATTCTTCAGGACTGCTACC 979
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 TATTAAACTTCTTGAAGAAGAAGCTCATAGCAATCAAAAGAATTCTTCAGGACTGCTACC 932
Query 980 TCTGCCATTATATTCAGGACTCTCTCGATCAGAACAGGAATTGATCTTTACTCCAACTCC 1039
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 933 TCTTCCATTATATTCAGGACTTTCTCGATCAGAACAGGAATTGATCTTTACTCCAACTCC 992
Query 1040 CAGAGGAAAGAGAAAAGTTATACTATCAACAAATATTGCTGAAACTTCATTGACTCTGGA 1099
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 993 CAGAGGAAAGAGAAAAGTTATACTATCAACAAATATTGCAGAAACTTCATTGACTCTAGA 1052
Query 1100 GGGTGTTGTCTATGTGATTGATAGTGGTTTCTCGAAGCAGAAGTTCTATAACCCAATTTC 1159
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1053 GGGCGTTGTCTATGTGATTGATAGTGGTTTCTCGAAGCAGAAGTTCTATAACCCAATTTC 1112
Query 1160 GGATATCGAAAGTCTTGTGGTGGCACCTATATCCAAAGCATCTGCAAGGCAAAGGTCTGG 1219
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1113 AGATATCGAAAGTCTTGTGGTGGCTCCAATATCAAAAGCATCTGCAAGGCAAAGGTCTGG 1172
Query 1220 TAGGGCTGGGCGAGTTCGGCCTGGGAAGTGTTACAGGCTTTATACCGAAGATTATTTTCT 1279
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1173 TAGGGCTGGGCGAGTTCGGCCTGGGAAGTGTTACAGGCTTTACACCGAAGATTATTTTCT 1232
Query 1280 CAACCAAATGCCTGGAGAAGGCATACCGGAGATGCAGAGGTCGAATCTTGTTTCTACTGT 1339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 CAACCAAATGCCTGGAGAAGGCATACCGGAGATGCAGAGGTCGAATCTTGTTTCTACTGT 1292
Query 1340 AATACAGCTAAAAGCTCTGGGCATAGATAATATCTTGGGTTTCGATTGGCCTGCACCTCC 1399
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 AATACAGCTAAAAGCTTTGGGCATAGATAATATCTTGGGTTTCGATTGGCCTGCACCTCC 1352
Query 1400 ATCCCCTCAAGCAATGATCCGAGCACTTGAAGTACTTTATTCACTTCAGATCCTCGATGA 1459
||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 ATCGTCTGAAGCAATGATTCGAGCACTTGAAGTACTTTATTCACTTCAGATCCTCGATGA 1412
Query 1460 TGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCACTGGACCCAAT 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TGATGCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCACTGGACCCAAT 1472
Query 1520 GATATCAAAAATGATTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTACAAT 1579
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1473 GATATCAAAAATGATTTTGGCTTCAAGTGAGCTTGGTTGTTCACATGAGATCATTACAAT 1532
Query 1580 CGCTGCAGTTCTCTCTATCCAATCTGTTTGGATCATTGCCAGGGGAGTACAGAAAGAACA 1639
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1533 CGCTGCAGTTCTCTCTGTCCAATCTGTTTGGATCATTGCCCGGGGAGTACAGAAAGAACA 1592
Query 1640 AGATGAAGCAAAACTGAGATTTGCAGCCGCAGAGGGTGACCATGTCACATTCCTGAATGT 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1593 AGATGAAGCAAAACTGAGATTTGCAGCCGCAGAGGGTGACCATGTCACATTCCTGAATGT 1652
Query 1700 ATACAAAGGGTTTCTTGAGTCGAAAAAGCCTTCACAGTGGTGTTACAAGAATTTCCTCAA 1759
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1653 ATACAAAGGGTTTCTTGAGTCGAAAAAGCCTACACAGTGGTGTTACAAGAATTTCCTCAA 1712
Query 1760 CTACCAATCCATGAAAAAAGTAGTTGAAATCAGGGATCAACTCAAACGGATTGCTCGGAG 1819
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1713 CTACCAATCCATGAAAAAAGTAGTTGAAATCAGAGATCAACTCAAACGGATTGCTCGGAG 1772
Query 1820 ATTAGGCATCACCTTGAAATCATGTGACAGAGACATGGAGGCTGTGAGAAAAGCCGTGAC 1879
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1773 ATTAGGCATCACCTTGAAATCATGTGACGGAGACATGGAGGCTGTGAGAAAAGCTGTGAC 1832
Query 1880 TGCAGGGTTTTTTGCCAATGCATGCCGCTTAGAACCACACAGCAATGGTGTATTCAAGAC 1939
|||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 1833 TGCAGGTTTTTTTGCCAATGCATGCCGTTTAGAACCACACAGCAATGGAGTATACAAGAC 1892
Query 1940 CATTAGAGGCTCTGAAGAAGTTTATATTCACCCTTCATCTGTATTATTCAGGGTGAATCC 1999
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1893 CATTAGAGGCTCTGAAGAAGTTTATATTCATCCGTCATCTGTATTATTCAGGGTGAATCC 1952
Query 2000 GAAATGGGTGGTCTACCAATCCATCGTATCAACAGAGCGTCAATACATGCGGAATGTCGT 2059
||||||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 1953 AAAATGGGTGGTTTACCAATCCATTGTCTCAACTGAGCGTCAATACATGCGGAATGTCGT 2012
Query 2060 CACCATCAATCCTTCTTGGCTGACAGAAGTTGCTCCACACTTTTACCAGAACCGGCAAAA 2119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2013 CACCATCAATCCTTCTTGGCTGACAGAAGTTGCTCCACACTTTTACCAGAACCGGCAAAA 2072
Query 2120 CACTATGTCCTTCTA 2134
| |||||||||||||
Sbjct 2073 CGCTATGTCCTTCTA 2087
> AT1G57740.1 | Symbols: | pseudogene, putative cytochrome P450,
blastp match of 77% identity and 2.0e-12 P-value to GP|8096593|dbj|BAA96166.1||AP002092
unnamed protein product {Oryza
sativa (japonica cultivar-group)} | chr1:21382131-21383304
FORWARD LENGTH=1174
Length=1174
Score = 228 bits (123), Expect = 2e-58
Identities = 154/169 (91%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 1344 CAGCTAAAAGCTCTGGGCATAGATAATATCTTGGGTTTCGATTGGCCTGCACCTCCATCC 1403
|||||||||||| | ||||||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 165 CAGCTAAAAGCTTTAGGCATAGATAATATCTT-GGTTTCGAATGGCCTGCGCCTCCGTCC 223
Query 1404 CCTCAAGCAATGATCCGAGCACTTGAAGTACTTTATTCACTTCAGATCCTCGATGATGAT 1463
| | |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 224 CATGAAGCAATGATCCTAGCACTTGAAGTACTTTATTCACTTCAGATCCTTGATGATGAT 283
Query 1464 GCTAAACTCACTTCGCCAACAGGATTCCAAGTTGCAGAACTTCCACTGG 1512
|||| ||| |||||||||||||||||||||| | ||||||||||||||
Sbjct 284 GCTATACTTACTTCGCCAACAGGATTCCAAGAAGTAGAACTTCCACTGG 332
Score = 128 bits (69), Expect = 2e-28
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1519 TGATATCAAAAATGATTTTGGCTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTACAA 1578
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 423 TGATATCGAAAATGATTTTGACTTCAAGTGAGCTTGGTTGTTCAGATGAGATCATTGTAA 482
Query 1579 TCGCTGCAGTTCTCTCTATCC 1599
|||||||||||||||||||||
Sbjct 483 TCGCTGCAGTTCTCTCTATCC 503
Score = 71.3 bits (38), Expect = 4e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 1307 GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATAC 1344
||||||||||||||||||||||||||||||||||||||
Sbjct 18 GGAGATGCAGAGGTCGAATCTTGTTTCTACTGTAATAC 55
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106876960305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5