BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946348

Length=502
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18460.1 | Symbols:  | D-Tyr-tRNA(Tyr) deacylase family prot...   793    0.0  


> AT4G18460.1 | Symbols:  | D-Tyr-tRNA(Tyr) deacylase family protein 
| chr4:10195537-10196796 REVERSE LENGTH=805
Length=805

 Score =  793 bits (429),  Expect = 0.0
 Identities = 478/502 (95%), Gaps = 1/502 (0%)
 Strand=Plus/Plus

Query  1    GGAATTATCAGATTAGAGCAATGAGAGCTGTAATCCAGAGAGTCTCATCTTCCTCTGTTA  60
            |||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  98   GGAATTGTCAGATCAGAGCAATGAGAGCTGTAATCCAAAGAGTCTCATCTTCCTCTGTTA  157

Query  61   CAGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTATTAATTGGAATCC  120
            | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  158  CGGTGGATGGTCGAATCGTATCGGAGATTGGTCCTGGTCTCTTGGTACTAATTGGAATCC  217

Query  121  ATGAATCAGATACCGATTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT  180
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  218  ATGAATCAGATACCGAGTCTGACGCTGATTACATATGTCGAAAAGTTTTAAACATGAGAT  277

Query  181  TGTTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTGATGCAGAGGAATTATG  240
            | ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  278  TATTCTCTAATGAAACCACTGGCAAAGGATGGGACCAAAATGTAATGCAGAGGAATTATG  337

Query  241  GAGTTTTACTTGTTAGTCAGTTCACATTATACGGATTCTTGAAAGGTAACAAACCTGATT  300
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  338  GAGTTTTACTTGTTAGTCAATTCACATTATACGGATTCTTGAAAGGTAACAAACCAGATT  397

Query  301  TTCATGTCGCAATGCCACCTGATAAAGCGAAGCCGTTTTACGCCTCTTTACTCGAGAAAT  360
            ||||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||
Sbjct  398  TTCATGTCGCAATGCCACCTGATAAAGCGAAACCTTTTTACGCCTCTTTAGTTGAGAAAT  457

Query  361  TCCAGAAAGCATATAATCCCGATGCAGTAAAAGATGGTGTGTTTGGAGCTATGATGCAGG  420
            ||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct  458  TCCAGAAAGCATATAATCCTGATGCTGTCAAAGATGGTGTGTTTGGAGCTATGATGCAGG  517

Query  421  TCAATCTTGTAAACGACGGTCCAGTCACGATGCAGCTTGAATCACCCCAATCCTCCAAGT  480
            |||||||||||||||| ||||| |||||||||||||| || ||||| |||||| ||||||
Sbjct  518  TCAATCTTGTAAACGATGGTCCGGTCACGATGCAGCTCGACTCACCTCAATCCACCAAGT  577

Query  481  AAGCCAAGATT-TTTTGCATAA  501
            ||||||||||| ||||||||||
Sbjct  578  AAGCCAAGATTGTTTTGCATAA  599



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23961688119


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5