BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946350
Length=956
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18450.1 | Symbols: | Integrase-type DNA-binding superfamil... 1210 0.0
> AT4G18450.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr4:10190250-10191161 REVERSE LENGTH=912
Length=912
Score = 1210 bits (655), Expect = 0.0
Identities = 832/918 (91%), Gaps = 9/918 (1%)
Strand=Plus/Plus
Query 21 ATGGCTTTTGGCAATATCCAAGAACCAGACGGAGAGATCCTAGAGAATGTTTGGGCGAAT 80
||||||||||||||||||||||||| |||||| ||||||||| |||| ||||||||||||
Sbjct 1 ATGGCTTTTGGCAATATCCAAGAACTAGACGGCGAGATCCTAAAGAACGTTTGGGCGAAT 60
Query 81 TTCATCAGAAAACCACAAACCGATAAAAGATCAATTCATGTTCCAGAAGTTTCTAGAACT 140
| |||| ||| |||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 61 TACATCGGAACACCACAAACCGATACAAGATCAATTCAAGTTCCAGAAGTTTCTAGAACT 120
Query 141 TGGGGAGCGTTGCCTACCCTTGATGACATACCAGAAGATTCTAAAGAAATGCTTCCAAGC 200
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||
Sbjct 121 TGGGAAGCGTTGCCTACCCTTGATGACATACCAGAAGGTTCTAGAGAAATGCTTCAAAGC 180
Query 201 CTAGATATGTCGATGGAGGACCTGGAATGGACAGAGATTCTCGATG-TGATCGCTTCTTT 259
||||||||||||| |||||||| ||||||||||||||||||||||| | || ||||||||
Sbjct 181 CTAGATATGTCGACGGAGGACCAGGAATGGACAGAGATTCTCGATGCT-ATTGCTTCTTT 239
Query 260 CCCGAGCGAAACCAATCATGACCCATTAACCAACCCTACCACCGATTCTTGTTTTTTGCC 319
||| | | ||||||||||||| ||||||||||||||||||| ||||| |||| |||| |
Sbjct 240 CCCAAACAAAACCAATCATGATCCATTAACCAACCCTACCATTGATTCATGTTCTTTGTC 299
Query 320 TTCTCGGGTTTGTTGCAAAACAAGAAAATACAGGGGAGTACGGAGGCGTCCGTGGGGGAA 379
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 TTCTCGGGTTTCTTGCAAAACAAGAAAATACAGGGGAGTACGGAAGCGTCCGTGGGGGAA 359
Query 380 ATTCGCAGCAGAGATCAGGGATTCGACGAGAAACGGTGTTAGGGTTTGGCTCGGAACGTT 439
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATTTGCAGCCGAAATCAGGGATTCGACGAGAAACGGTGTTAGGGTTTGGCTCGGAACGTT 419
Query 440 CCAAACAGCAGAAGAGGCAGCTATGGCTTACGATAAAGCCGCGGTTAGAATTAGAGGAAC 499
|||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 CCAAACTGCAGAGGAAGCAGCTATGGCTTACGATAAAGCCGCGGTTAGAATTAGAGGTAC 479
Query 500 TCAAAAAGCGCACACGAATTTTCAACTCGAGACGGTTATTAAAGCTATGGAAATGGATTG 559
||||||||| ||||| |||||||| ||||| || ||||| ||||||||||||||||||||
Sbjct 480 TCAAAAAGCTCACACAAATTTTCAGCTCGAAACAGTTATAAAAGCTATGGAAATGGATTG 539
Query 560 CAACCCAAACTACTACCCGATAAACAGCTCGAATACGTCCCAGCCATTAAGAAGTGGCCA 619
||||||||||||||||| ||| |||| ||| ||||||||| | ||||||||||| |||
Sbjct 540 CAACCCAAACTACTACCGGATGAACAACTCAAATACGTCCGATCCATTAAGAAGCAGCCG 599
Query 620 CAAAATTGGATTGAGAACGA-GAAAAGAGGCGATTAGGGCTTATGATAAAGTCGTTGATG 678
|||||| ||||||||||| | ||||||||||| ||| |||||||||| ||||||||||||
Sbjct 600 CAAAATCGGATTGAGAAC-AGGAAAAGAGGCGGTTAAGGCTTATGATGAAGTCGTTGATG 658
Query 679 AGTTGGTTGAAAACCACTGTGCCCTTAGTTGTTGTTCAACTAAGAAGTACTCGGAGACGT 738
| ||||||||||||| ||||||||||| | ||||||||||||| || |||||||||| |
Sbjct 659 GGATGGTTGAAAACCATTGTGCCCTTAGCTATTGTTCAACTAAGGAGCACTCGGAGAC-T 717
Query 739 -GTGGGCTGCTTGGGAGTGAAGAAACTTGGTTAGGTTCAAGAAAGAGACGAAGGAGTGAC 797
|||| ||| ||||||||||||||||||||| | || ||||||||||||||||||| |
Sbjct 718 CGTGGTTTGCGTGGGAGTGAAGAAACTTGGTTCGATTTAAGAAAGAGACGAAGGAGTAAT 777
Query 798 AAAGATTATATGTTTGAAGAAGTTGAAATGCAGAAGATGGTTACTGAACAAGAAGAGACA 857
|||||| ||||| | ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 778 GAAGATTCTATGTGTCAAGAAGTTGAAATGCAGAAGACGGTTACTG---GAGAAGAGACA 834
Query 858 TTATGTGATGTGTTTGGTTTGTTTGAGTTTGAGGATTTGGGAAGTGATTATTTGGACACG 917
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 835 GTATGTGATGTGTTTGGTTTGTTTGAGTTTGAGGATTTGGGAAGTGATTATTTGGAGACG 894
Query 918 TTATTATCTTCTTTCTGA 935
|||||||||||||| |||
Sbjct 895 TTATTATCTTCTTTTTGA 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46767990857
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5