BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946353
Length=686
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18425.1 | Symbols: | Protein of unknown function (DUF679) ... 1081 0.0
> AT4G18425.1 | Symbols: | Protein of unknown function (DUF679)
| chr4:10181334-10182140 REVERSE LENGTH=807
Length=807
Score = 1081 bits (585), Expect = 0.0
Identities = 647/677 (96%), Gaps = 3/677 (0%)
Strand=Plus/Plus
Query 3 GGAAACAACTTCAAAAAATATGGAGATCAAAGTTGATGAAGATCATCAAAAAAGTACTAA 62
|||||||||||| ||| ||||||||||||||||||| |||| |||||||||| |||||||
Sbjct 61 GGAAACAACTTC-AAAGATATGGAGATCAAAGTTGACGAAGGTCATCAAAAAGGTACTAA 119
Query 63 AGAAGACATCACAAGGCCACTTCTTGAAGAAGACAAAAACTTCCCGGATATAGAAAGAAC 122
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 120 AGAAGACATTACAAGGCCACTTCTTGAAGAAGACAAAGACTTCCCGGATATAGAAAGAAC 179
Query 123 GACATGGATACAAAAGGCAATAGGTCAAACGTTTCAAACCACTGCTCATTTAGCTAATCT 182
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 180 GACATGGATACAAAAGGCAATAGGTCAAACATTTCAAACCACTGCTCATTTAGCTAATCT 239
Query 183 CTTACCAACAGGAACGGTGCTCGCGTTTCAGC-TCTTATCGCCAATTTTCTCAAACGGCG 241
||||||||||||||| || ||||||||||||| || ||||||||||||||||||| ||||
Sbjct 240 CTTACCAACAGGAACCGTTCTCGCGTTTCAGCTTC-TATCGCCAATTTTCTCAAATGGCG 298
Query 242 GTCAATGCGATTTAGTGAGCAAGATCATGACATCAACTCTAGTGGCAATATGTGGATTCT 301
||||||||||||||||||||||||| |||||||| || || || ||||||||||||||||
Sbjct 299 GTCAATGCGATTTAGTGAGCAAGATAATGACATCGACACTGGTAGCAATATGTGGATTCT 358
Query 302 CTTGCTTCATACTTAGCTTCACGGATTCTTACAAAGACAAAAACGGTACTATTTGTTATG 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 359 CTTGCTTCATACTTAGCTTCACAGATTCTTACAAAGACAAAAACGGTACTATTTGCTATG 418
Query 362 GACTTGCAACAATCCATGGGTTTTGGATCATTGATGGATCCACAACTCTTCCTCAAGAAT 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GACTTGCAACAATCCATGGGTTTTGGATCATTGATGGATCCACAACTCTTCCTCAAGAGT 478
Query 422 TATCTAAGAGATATAAGTTAAGATTCATAGATTTTGTTCATGCTTTCATGTCGTTATTCG 481
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 TATCTAAGAGATATAAGCTAAGATTTATAGATTTTGTTCATGCTTTCATGTCGTTATTCG 538
Query 482 TGTTTGGTGCGGTGGTTCTATTCGATCGAAATGCGGTAAATTGTTTCTTTCCGGCACCGT 541
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 539 TGTTTGGTGCGGTGGTTTTATTCGATCGAAATGCGGTAAATTGTTTCTTTCCATCACCGT 598
Query 542 CAGCGGAAGCATTGGAAGTTCTTACCGCTTTGCCGGTAGGCGTAGGGGTGTTTTGTAGTA 601
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 599 CAGCAGAAGCATTGGAAGTTCTTACAGCTTTGCCGGTAGGCGTAGGGGTGTTTTCTAGTA 658
Query 602 TGTTGTTTGCAACATTTCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAGTAAAT 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGTTGTTTGCAACATTTCCTACAACACGCAATGGGATTGGTTTTCCACTTTCTAGTAAAT 718
Query 662 GATATCAATATGTTGTT 678
|||||||||||| ||||
Sbjct 719 GATATCAATATGCTGTT 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33204771167
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5