BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946357
Length=607
Score E
Sequences producing significant alignments: (Bits) Value
AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 396 1e-109
> AT1G23201.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; CONTAINS InterPro DOMAIN/s: GCK
(InterPro:IPR012891); BEST Arabidopsis thaliana protein match
is: GCK domain-containing protein (TAIR:AT5G02210.1); Has
106 Blast hits to 71 proteins in 9 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 106; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:8230209-8230775
FORWARD LENGTH=567
Length=567
Score = 396 bits (214), Expect = 1e-109
Identities = 430/529 (81%), Gaps = 35/529 (7%)
Strand=Plus/Plus
Query 33 ATGTCATCTACGGATCTGAAACAGGAATCCAAATCTGAAAATAACCAAGTC-C--C-AA- 87
|||||||| ||||||||||||| |||||||||| ||||||||||||||||| | | ||
Sbjct 1 ATGTCATCCACGGATCTGAAACCGGAATCCAAACCTGAAAATAACCAAGTCTCGTCGAAG 60
Query 88 CC-AAGGAAGTGGGAGATCGATTA-CAAGAGTTTATGAAAAAAGGTGGTTGCGAA-AATT 144
|| ||| |||| ||| |||| || || | ||| |||||| |||||||||||||| || |
Sbjct 61 CCGAAGCCAGTGAGAGGTCGA-TATCATGTGTTCATGAAAGAAGGTGGTTGCGAAGAA-T 118
Query 145 CATATATAGCTTGTGTAGGTTGTGAT-TCGCGGGAAGATGA-GTGTACGGAAGCCTATTC 202
|||||| |||| ||||||| ||||| | || | ||||| | ||||| ||||||||||||
Sbjct 119 CATATACCGCTTTTGTAGGTCGTGATGT-GCAGAAAGAT-ACGTGTAGGGAAGCCTATTC 176
Query 203 AATGCTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAGACG-TATCTCGCGCTGA 261
||| |||||||||||||||||||||||||||||||||||||| || | ||||||| ||
Sbjct 177 GATGGTGGAAAAGTGTATGAAGGCTCGCTCTGATTACTTTGAG-CGATTTCTCGCGTTGC 235
Query 262 AGAACGCTAGTGCTGAAGTGATGGCTAGGGAGA--TCGAAGTCTTCCTCCATGCGAAACC 319
|||||||||| |||||||||||| | || |||| |||| | ||||||||||||||||||
Sbjct 236 AGAACGCTAGGGCTGAAGTGATG-C-AGAGAGAAATCGATGCCTTCCTCCATGCGAAACC 293
Query 320 AAATGACAGAGACGAGTTGTT-AGGCAAATTCATTACAAGAGGTGGTTGCAAAGAAGCTT 378
||| |||||||||||| |||| | ||| ||||| |||||||||| |||||||||||| |
Sbjct 294 AAAGGACAGAGACGAGATGTTTAC-CAAGTTCATGACAAGAGGTGCTTGCAAAGAAGCAT 352
Query 379 TTATGGCTTGGAGGGA-TAGTTACGAAGAAGCCAAGAAGAACAAGGGAAGTCT-T--T-A 433
|||||||||||| || | | | ||||| | | ||||||||| |||| | | | |
Sbjct 353 TTATGGCTTGGATTGACTTCTG-CAAAGAATCTAGGAAGAACAATAAAAGT-TGTCGTCA 410
Query 434 TACA-CCTGCCTTGAACACCTTG-TCAAAGTGTATGGAGGCTCACTCTGATTACTATCAG 491
|| | |||||| || ||||| || |||| |||| || ||||||||||||||||||||||
Sbjct 411 TA-ATCCTGCCATGGACACCATGCTCAA-GTGTGTGAAGGCTCACTCTGATTACTATCAT 468
Query 492 CCATTTCTCGCAGTGGTCAAAAATTATGAAGAACA-CTATAGTAAGGAG 539
|| ||||| | || ||||| | ||||||||| | ||| ||||||
Sbjct 469 CCGCTTCTCACGGTATTCAAAGCTGGTGAAGAACATC-ATAAAAAGGAG 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29236273554
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5