BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946360
Length=401
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18395.1 | Symbols: | unknown protein; Has 30201 Blast hits... 641 0.0
> AT4G18395.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:10169444-10169930
FORWARD LENGTH=487
Length=487
Score = 641 bits (347), Expect = 0.0
Identities = 384/402 (96%), Gaps = 2/402 (0%)
Strand=Plus/Plus
Query 1 TATGGAGACAAGGTTTCCAAATGTTACAAAAATCACCCTATC-TCTTTATCTCAGACGAC 59
||||||||||||||||||||||||| |||||||||||||| | |||||||||| ||||||
Sbjct 12 TATGGAGACAAGGTTTCCAAATGTTGCAAAAATCACCCTA-CATCTTTATCTCCGACGAC 70
Query 60 AATGATCACAATAATCTCCAGTACACGAGCTTGAAAGATGTGATCTCAAGTTCCGATGGA 119
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 71 AATGATCAGAATAATCTCCAGTACACGAGCTTGAAAGACGTGATCTCAAGTTCCGATGGA 130
Query 120 TTTGGTTCGTTGTTTTGTCACCCACAATACAGTGTTCCTTCACAAGATGGGTTTCTCTTG 179
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 131 TTTGGTTCGTTGTTTTGTCACCCACAATACAGTGTTCCTTCACAAGATGGTTTTCTCTTG 190
Query 180 TCTGAGATGGATTCTTCTAACATCGCCATTAGAAACGAGCTTGTGAAAAGAGCAGCTTCA 239
|| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||
Sbjct 191 TCAGAGATGGATTCTTCTAACATCGCCATTAGCAACGAGCTCGTGAAAAGAGCAGCCTCG 250
Query 240 ATGTATGTTCAATCTTCTATGGTTGTTATTGCCCCTGATACGAACTGGTTCCAGAGATTC 299
||||||||||||||||||||| |||| ||||| ||||| ||||| |||||||||||||||
Sbjct 251 ATGTATGTTCAATCTTCTATGATTGTCATTGCTCCTGACACGAATTGGTTCCAGAGATTC 310
Query 300 TGTTTGAAAGCTAAGCATCAGGCGGTTGCTGCGATTGATTGTCTTAGACCGGTTTGCCGG 359
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 TGTTTGAAGGCTAAGCATCAGGCGGTTGCTGCGATTGATTGTCTTAGACCGGTTTGCCGG 370
Query 360 ATTTTCGCTCGGTCTAGTTAAGAGATGTCTTTAGAAAGGGTG 401
||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATTTTCGCTCGGTCTAGTTAAGAGATGTCTTTAGAAAGGGTG 412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18950941373
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5