BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946362
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-... 1716 0.0
AT5G46170.1 | Symbols: | F-box family protein | chr5:18714965-... 835 0.0
> AT4G18380.1 | Symbols: | F-box family protein | chr4:10157887-10159748
FORWARD LENGTH=1673
Length=1673
Score = 1716 bits (929), Expect = 0.0
Identities = 1110/1195 (93%), Gaps = 22/1195 (2%)
Strand=Plus/Plus
Query 13 TCTCATCAATGGCGATAATTCTCCGTTCATCAGATCCACTCCTCTCTCGAATCCATCCCC 72
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 63 TCTCACCAATGGCGATAATTCTCCGTTCATCAGATCCACTCCTCTCACGAATCCATCCGG 122
Query 73 AACCACAACAAATCGACCACTTCGATCACCTCCCTGACTCAATCCTCCTCCTCATCTTCA 132
|||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 123 AACCACAAGAAATCGACCACTTCGATAACCTCCCAGACTCAATCCTCCTCCTCATCTTCA 182
Query 133 ACAACATCGGCGATGTCAAAGCCTTAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATT 192
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 ACAACATCGGCGACGTCAAAGCCTTAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATT 242
Query 193 TCTTAATCCCTCAAGTCGAGAATGTCGTCGTTCGTGTCGATTGCGTTATCTCCGACGACG 252
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 243 CCTTAATCCCTCAAGTCGAAAATGTCTTCGTTCGTGTCGATTGCGTTATCTCCGACGACG 302
Query 253 ATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGTCGCCGCTGCTACTCCTTTCTCCG 312
|||||||||||||||||||||||||||||||||||| | |||| ||| ||||||||||||
Sbjct 303 ATTCTTCCTCTCTCCTCTCCGATAAACCTCGATCCGCCTCCGCCGCTTCTCCTTTCTCCG 362
Query 313 CCATTTTCCGTCTCGTGTTTAAGCCGTTACAAGCTTTGGGACAGTTCCTTAAACGCTCAG 372
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 363 CCATTTTCCGTCTCGTCTTCAAGCCGTTACAAGCTTTGGGACAGTTCCTTAAACGCTCAG 422
Query 373 GTTCTGCTTCTTC-TCCTTCAGGATCATCTTCTCCTTCTTCGTTGTTGATTAGTGGTGGT 431
||||| |||| || ||||||||||||| |||||||||||||||||||||| |||||
Sbjct 423 GTTCTTCTTC-TCTTCCTTCAGGATCA---TCTCCTTCTTCGTTGTTGATTA---GTGGT 475
Query 432 GGTGGAGATGATGGAGAGATTGAACAAGGAGGTGTGACGCATCATTCTCCGACTCAGGTT 491
||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 476 GGT---GATGATGGAGAGATTGAACAAGGAGGTGTAACGCATCATTCACCGACTCAGGTT 532
Query 492 TTGAAAAACTTCGATGAGATTCGGTTTCTTCGTATCGAGCTTCCTAGTGGTGAATTAGGG 551
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 533 TTGAAAAACTTCGATGAGATTAAGTTTCTTAAAATCGAGCTTCCTAGTGGTGAATTAGGG 592
Query 552 ATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCTACTCTTGAGAATTGT 611
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 593 ATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGTTCTACTCTCGAGAATTGT 652
Query 612 GTGATTCTCGGTGCTTCCTCTGTGATTCCGGCGACGAATTCGGATACTTCCGTTGATCTT 671
||||| |||||||||||||||||||||||| ||||||||||||||| | | | |
Sbjct 653 GTGATCCTCGGTGCTTCCTCTGTGATTCCGCCGACGAATTCGGATAAGACGGAAG--CG- 709
Query 672 AGTAGTAGTAACAACGCGGTGGCGGTGGCGGAGGATAATGGAAGTATACCGGAATCGTTT 731
||| | | | | || | |||| || ||| |||||||||||||||||||||||||||
Sbjct 710 AGT--TCGGCTC--C-CG-TCGCGGCGGTGGAAGATAATGGAAGTATACCGGAATCGTTT 763
Query 732 TATACAAACGGAGGGCTTAAGCTTCGTGTTGTATGGACAATTAGCTCTTTGATTGCTGCA 791
||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 764 TATACAAACGGAGGGCTTAAGCTACGTGTTGTATGGACTATAAGCTCTTTGATTGCTGCT 823
Query 792 TCTGCTAGACATTACTTGTTGCAGCCGATTATCGCAGAGCATAAGACGCTTGATAGTTTA 851
|| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 824 TCCGCTAGACATTACTTGTTGCAACCGATTATAGCAGAGCATAAGACGCTTGATAGTTTA 883
Query 852 GTGCTTACTGATGTTGATGGGCAAGGAGTGTTGTGTATGAATAGAGATCAGTTGGAAGAA 911
|||||||||||||||||||| |||||||| |||||||||||| |||||||||| || |||
Sbjct 884 GTGCTTACTGATGTTGATGGTCAAGGAGTTTTGTGTATGAATCGAGATCAGTTAGAGGAA 943
Query 912 TTGAGGGTGAAACCATTGTCAGCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTG 971
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TTGAGAGTGAAACCATTGTCAGCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTG 1003
Query 972 AATATGAGACTTTGGTATGCTCCTACTTTGGAATTGCCTGATGGGACGGTGTTGAAAGGA 1031
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||
Sbjct 1004 AATATGAGACTTTGGTATGCTCCTTCTTTGGAATTGCCTGATGGGACTGTGTTGAAGGGA 1063
Query 1032 GCTACGCTTGTGGCGATTAGACCGAGCGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTGG 1091
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1064 GCTACGCTTGTGGCGATTAGGCCGAGTGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTGG 1123
Query 1092 GTTTCTTCTGCGTTTGATGAGTCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGG 1151
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GTTTCTTCTGCGTTTGATGAGCCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGG 1183
Query 1152 ACTTATTGTCTTGAAATGAATTCGTTCTAAAGCTTGGA-GATTTCGATAAGTCGG 1205
|||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 1184 ACTTATTGTCTTGAAATGAATTCGTTCTAAAGCTTG-ACGATTTCGCTAAGTCGG 1237
> AT5G46170.1 | Symbols: | F-box family protein | chr5:18714965-18716953
REVERSE LENGTH=1691
Length=1691
Score = 835 bits (452), Expect = 0.0
Identities = 930/1149 (81%), Gaps = 79/1149 (7%)
Strand=Plus/Plus
Query 82 AAATCGACCACTTCGATCACCTCCCTGACTCAATCCTCCTCCTCATCTTCAACAACATCG 141
|||||||||| |||||||| || ||||||||||||||||||||| | |||||||| ||||
Sbjct 196 AAATCGACCATTTCGATCATCTTCCTGACTCAATCCTCCTCCTCGTTTTCAACAAAATCG 255
Query 142 GCGATGTCAAAGCCT-TAGGTCGTTGCTCCGTCGTCTCCAAAAGATTCCATTTCT-TAAT 199
|||| ||||||| || | || | |||| |||||| |||| ||||||||| |||| | |
Sbjct 256 GCGACGTCAAAG-CTCTCGGAAGATGCTGCGTCGTTTCCAGAAGATTCCA-TTCTCTCGT 313
Query 200 CCCTCAAGTCGAGAATGTCGTCGTTCGTGTCGATTGCGTTATCTCCGACGACGATTCTTC 259
||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 314 TCCTCAAGTCGATAACGTCGTTGTTCGTGTCGATTGCGTAATCTCCGACGACGATTCGTC 373
Query 260 CTCTCTCCTC-TCCGAT-AAACCTCGATCC-G-TC-GCCGCTGCTACTCCTTTCTCCGCC 314
||| | || | | || ||| |||| ||| | || |||||| | | | ||||| ||
Sbjct 374 ATCT-TTGTCAT-CTATCAAATCTCGCTCCGGTTCTTCCGCTGGT--T-CGTTCTCGGCT 428
Query 315 AT-TTTC--C--G-T-CTCGT-G---T-TTAAGCCGTTACAAGCTTTGGGACAGTTCCTT 362
|| |||| | | | | || | | ||||||||||||||||||| || || ||||||
Sbjct 429 ATATTTCGTCTTGTTGTTGGTGGCATTGTTAAGCCGTTACAAGCTTTAGGTCAATTCCTT 488
Query 363 -AAACGCTCAG-GTTC-TGCTTCTTC-TCCTTCAGGATC---ATCTTCTCCTTCTTCGTT 415
||| || | || | | || || | | || || ||||||| ||||||||||
Sbjct 489 GGTACG--AAGAGATCAT-CATCATCAT-GTGGTGGTTCTGGATCTTCTTCTTCTTCGTT 544
Query 416 GT-TGATTAGTGGTGGTGGTGGAGATGATGGAGAGATTGAACAAGGAGGTGTGACGCATC 474
|| | |||||||| | || | |||| ||||||||| |||||||| ||||| |||||||
Sbjct 545 GTCT-ATTAGTGGAGATGAT---GATGGTGGAGAGATCGAACAAGGCGGTGTTACGCATC 600
Query 475 ATTCTCCGACTCAGGTTTTGAAAAACTTCGATGAGATTCGGTTTCTT-CGTATCGAGCTT 533
|||| || ||||||||||||||||||||||||||||||| ||| ||| | || ||||||
Sbjct 601 ATTCACCTACTCAGGTTTTGAAAAACTTCGATGAGATTC-GTTACTTAAGAATTGAGCTT 659
Query 534 CCTAGTGGTGAATTAGGGATTGATGATGGTGTTTTATTGAAATGGAGAGCTGAATTTGGT 593
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 660 CCTAGTGGTGAATTAGGGATTGATGATGGAGTTTTGTTGAAATGGAGAGCTGAATTTGGT 719
Query 594 TCTACTCTTGAGAATTGTGTGATTCTCGGTGCTTCCTCTGTGATTCCGGC-GA-CGAATT 651
||||||||||| ||||||||||||||||||||||| || |||||||| | | | |||
Sbjct 720 TCTACTCTTGATAATTGTGTGATTCTCGGTGCTTCTTCAGTGATTCCACCAAATCCAATG 779
Query 652 CG-GATACTTC---CGT-TGAT-CTTAGT--AGTAG-T-AA-CAACGCGGTGGCGGTGG- 699
| | | | || | | |||| | || | ||| | | || | | |||| | |||
Sbjct 780 AGAGTTTC-TCAAGCTTGTGATAC-TACTACAGTCGTTGAAGC-TCCCGGT-TC--TGGC 833
Query 700 -CGGAGGATAATGGAAGTATACCGGAATCGTTTTATACAAACGGAGGGCTT-AAGCTT-C 756
| || |||||||| |||||||||||||||||||| ||||||||| || || || || |
Sbjct 834 TCCGATGATAATGGGAGTATACCGGAATCGTTTTACACAAACGGA-GGTTTGAA-ATTGC 891
Query 757 GTGTTGTATGGACAATTAGCTCTTTGATTGCTGCATCTGCTA-GACATTACTTGTTGCAG 815
||||||||||||| ||||||||||||||||||||||| || | ||||||||||||| ||
Sbjct 892 GTGTTGTATGGACGATTAGCTCTTTGATTGCTGCATCAGC-ACGACATTACTTGTTACAA 950
Query 816 CCGATTATCGCAGAGCATAAGACGCTTGATAGTTTAGTGCTTACTGATGTT-GATGGGCA 874
||||| ||||| ||||||||||||||||||||||||||||| |||||| | ||||||||
Sbjct 951 CCGATAATCGCGGAGCATAAGACGCTTGATAGTTTAGTGCTCACTGAT-TCAGATGGGCA 1009
Query 875 AGGAGTGTTGTGTATGAATAGAGATCAGTTGGAAGAA-TTGAGGGTGAAACCATT-GTCA 932
||| ||| | |||||||| ||||||||| | ||||| || |||||||||||||| | ||
Sbjct 1010 AGGTGTGCTCTGTATGAACAGAGATCAGCTAGAAGAGCTT-AGGGTGAAACCATTAG-CA 1067
Query 933 GCTTCTTCAGCTTCTAAGAGGACTCTTGTACCTGCTTTGAATATGAGACTTTGGTATGCT 992
||||| || ||||| |||||||| ||||| |||||| ||||||||||||| |||||||||
Sbjct 1068 GCTTCATCGGCTTCGAAGAGGACACTTGTGCCTGCTCTGAATATGAGACTATGGTATGCT 1127
Query 993 CCTACTTTGGAATTGCCTGATGGGACGGTGTTGAAAGGAGCTACGCTTG-TGGCGATTAG 1051
|| || ||||||||||||||||| || ||||| ||||| || || ||| | ||||| ||
Sbjct 1128 CCAACCTTGGAATTGCCTGATGGAACTGTGTTAAAAGGTGCGACT-TTGGTTGCGATAAG 1186
Query 1052 ACCGAGCGAGTCGAAGAAGGAGGTGTGTGATGTGTCTTGGGTTTCTTCTGCGTTTGATGA 1111
|||||| || ||||| ||||| |||| |||| | |||||||| ||||| || ||||| ||
Sbjct 1187 ACCGAGTGAATCGAAAAAGGAAGTGTCTGATATCTCTTGGGTGTCTTCGGCTTTTGAGGA 1246
Query 1112 GTCTTATGGGGTAGCTGCTAAGATGTTGGTTAAGAGAAGGACTTATTGTCTTGAAATGAA 1171
| |||||| | |||||||||||| ||||||| ||||||||||| ||||||||||||||
Sbjct 1247 GCCTTATGAGACGGCTGCTAAGATGCTGGTTAAAAGAAGGACTTACTGTCTTGAAATGAA 1306
Query 1172 TTCGTTCTA 1180
||||||||
Sbjct 1307 CTCGTTCTA 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5