BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946364

Length=380
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18372.1 | Symbols:  | Small nuclear ribonucleoprotein famil...   575    1e-163


> AT4G18372.1 | Symbols:  | Small nuclear ribonucleoprotein family 
protein | chr4:10151116-10152120 REVERSE LENGTH=644
Length=644

 Score =  575 bits (311),  Expect = 1e-163
 Identities = 357/380 (94%), Gaps = 0/380 (0%)
 Strand=Plus/Plus

Query  1    ATAAGAAGCTTGTTGTTGGAATGGAACAAGCTGCAGAGAGAAGCTCAACCCTTGTTGCAT  60
            |||| |||| |||||| ||||||||||||||||||||||| || |||||| |||||||||
Sbjct  53   ATAAAAAGCCTGTTGTGGGAATGGAACAAGCTGCAGAGAGGAGTTCAACCATTGTTGCAT  112

Query  61   CAACCTCTGGAGGGTCGGATTTAGATCCGATATCTCGAGTGAGGAAGCTCTTGTTCCGCC  120
            | ||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct  113  CCACCTCTGAAGGGTCGGATTTTGATCCGATATCTCGATTGAGGAAGCTCTTGTTCCGCC  172

Query  121  AGATGCTTGTGGGAATCAAAGACGGGAGATTCTTCCTGGGAAATTTCCATTGCATTGACA  180
            | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct  173  AAATGCTTGTGGGAATCAAAGACGGCAGATTCTTCCTTGGAAATTTCCATTGCATTGACA  232

Query  181  AACAAGGAAACATCATTCTCCAGGATACTGTCGAGTATCGTAGCATAAGAAGATCGTCTC  240
            |||||||||||||||||||||| || ||||| ||||||||||||||| ||||||| ||||
Sbjct  233  AACAAGGAAACATCATTCTCCAAGACACTGTGGAGTATCGTAGCATACGAAGATCATCTC  292

Query  241  CTTCGCCTACTGAACAGCGTTGTCTTGGTATGATCCTAATCCCTTCCTCTTGCAGGACAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  293  CTTCGCCTACTGAACAGCGTTGTCTTGGTATGATCCTAATCCCTTCCTCTTGCAGGACAT  352

Query  301  CTTGCCATGTCGATTGCTCTATCGAGGAACAGCTTTCATTGATTCAGCTGAAAGAGTAGT  360
            |||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| 
Sbjct  353  CTTGCCATGTTGATTGCTCTATCGATGAACAGCTTTCGTTGATTCAGCTGAAAGAGTAGA  412

Query  361  GCCTCTTTTAAGACTTCATG  380
            || |||||||||||||||||
Sbjct  413  GCTTCTTTTAAGACTTCATG  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17895318644


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5