BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946367
Length=1147
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18360.1 | Symbols: | Aldolase-type TIM barrel family prote... 1858 0.0
> AT4G18360.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr4:10145919-10148682 REVERSE LENGTH=1380
Length=1380
Score = 1858 bits (1006), Expect = 0.0
Identities = 1102/1149 (96%), Gaps = 3/1149 (0%)
Strand=Plus/Plus
Query 1 TTTGAG-GTTGAG-CAAGAAAAATGGAGATAACTAACGTGATGGAATATGAGAAGATCGC 58
|||||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 30 TTTGAGTGTTGAGTAAATAAAAATGGAGATAACAAACGTGATGGAATATGAGAAGATCGC 89
Query 59 AAAGGAGAAATTACCAAAGATGGTTTATGATTACTATGCTTCTGGTGCTGAAGATCAATG 118
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 90 AAAGGAGAAATTACCAAAGATGGTTTATGATTACTATGCATCTGGTGCTGAAGATCAATG 149
Query 119 GACTCTTCAAGAGAATCGAAACGCTTTCTCCAGGATTCTATTTAGGCCTCGGATTCTTAT 178
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 150 GACTCTTCAAGAGAATCGAAACGCTTTCTCTAGGATTCTATTTAGGCCTCGGATTCTTAT 209
Query 179 CGATGTAAGCAAGATTGATGTGAGCACAAGGGTTTTAGGGTTTAACATTTCTATGCCAAT 238
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 210 CGATGTAAGCAAGATTGATGTGAGCACAACGGTTTTAGGGTTTAATATTTCTATGCCAAT 269
Query 239 CATGATTGCTCCTACTGCTATGCAGAAAATGGCTCATCCTGATGGCGAGCTTGCAACCGC 298
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 270 TATGATTGCTCCTACTGCAATGCAGAAAATGGCTCATCCTGATGGCGAGCTTGCAACCGC 329
Query 299 TAGAGCTACTTCTGCTGCTGGAACAATCATGACTTTATCTTCGTGGGCTACTTGTAGTGT 358
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 330 GAGAGCTACTTCTGCTGCTGGAACAATCATGACTTTATCTTCATGGGCTACTTGTAGTGT 389
Query 359 TGAGGAAGTTGCTTCCACAGGACCCGGAATTCGTTTTTTCCAACTCTATGTTTATAAGGA 418
||||||||||||||| || ||||| || ||||||||||||||||| ||||||||||||||
Sbjct 390 TGAGGAAGTTGCTTCAACCGGACCAGGGATTCGTTTTTTCCAACTTTATGTTTATAAGGA 449
Query 419 CAGAAATGTGGTTATACAGCTTGTGAAACGAGCGGAAGAAGCTGGATTTAAAGCGATTGC 478
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 450 TAGAAATGTGGTTATACAGCTTGTGAAACGAGCTGAAGAAGCTGGATTCAAAGCTATTGC 509
Query 479 TCTTACTGTAGATACTCCAAGGCTTGGACGCAGAGAATCTGATATCAAAAACAGATTCGC 538
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 510 TCTTACTGTAGATACTCCAAGGCTTGGACGCAGAGAATCTGACATCAAAAACAGATTCGC 569
Query 539 GCTTCCTCGAGGTCTAACATTGAAGAACTTCGAAGGGTTGGATCTTGGGAAAATAGACAA 598
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 570 GCTTCCTCGAGGTCTAACGTTGAAGAACTTCGAAGGGTTGGATCTTGGGAAAATAGACAA 629
Query 599 GACCAATGACTCAGGGCTAGCTTCATATGTTGCTGGTCAAGTTGATCAATCACTTAGCTG 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 630 GACGAATGACTCAGGGCTAGCTTCATATGTTGCTGGTCAAGTTGATCAATCACTTAGCTG 689
Query 659 GAAGGATATAAAATGGCTCCAAACAATCACAAGCTTGCCAATTCTTGTCAAGGGTGTTAT 718
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 690 GAAGGATATAAAATGGCTCCAATCTATCACAAGCTTGCCAATTCTTGTCAAGGGTGTTAT 749
Query 719 TACAGCTGAGGATGCAAGAATTGCTGTTGAATATGGAGCTGCAGGGATTATAGTCTCTAA 778
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 750 TACAGCTGAGGATGCAAGAATTGCTGTTGAATATGGAGCTGCAGGGATAATAGTCTCTAA 809
Query 779 CCACGGAGCTCGTCAACTTGATTATGTCCCTGCAACTATAGTGGCCTTAGAAGAGGTGGT 838
||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||||
Sbjct 810 CCACGGAGCTCGTCAGCTAGATTATGTTCCTGCAACTATAGTGGCCTTAGAAGAGGTGGT 869
Query 839 TAAAGCCGTGGAAGGTCGGATTCCGGTTTTTCTTGACGGCGGGGTTCGCCGTGGAACCGA 898
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 870 TAAAGCCGTGGAGGGTCGGATTCCGGTTTTTCTTGACGGTGGGGTTCGCCGTGGAACCGA 929
Query 899 TGTCTTTAAGGCATTGGCTCTTGGCGCTTCAGGTGTCTTTGTCGGGAGGCCGAGCTTGTT 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 TGTCTTTAAGGCATTGGCTCTTGGCGCTTCAGGTGTCTTTGTCGGGAGGCCGAGCTTGTT 989
Query 959 CTCGCTTGCAGCGGATGGAGAAGCGGGAGTGAGGAAGATGCTGCAAATGCTAAGAGATGA 1018
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 990 CTCGCTTGCAGCGGATGGAGAAGCGGGAGTTAGGAAGATGCTACAAATGCTAAGAGACGA 1049
Query 1019 GTTTGAGCTGACAATGGCACTAAGTGGCTGCCGTTCCCTGAGAGAGATCAGCCGAAACCA 1078
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||| |||
Sbjct 1050 GTTTGAGCTTACAATGGCACTAAGTGGTTGCCGTTCACTGAGAGAGATCAGCCGAACCCA 1109
Query 1079 CATCAAGACCGATTGGGACATTCCTCATTACCTCCCGGCCAAGCTGTAACCGAATCTTAT 1138
||||||||| |||||||||| ||||||||||||| ||||||||||||| |||||||||
Sbjct 1110 CATCAAGACTGATTGGGACACTCCTCATTACCTCTCGGCCAAGCTGTAGG-GAATCTTAT 1168
Query 1139 TCACCTCTT 1147
|||| ||||
Sbjct 1169 TCACTTCTT 1177
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56274810945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5