BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946375

Length=478
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G18280.1 | Symbols:  | glycine-rich cell wall protein-relate...   741    0.0  


> AT4G18280.1 | Symbols:  | glycine-rich cell wall protein-related 
| chr4:10103996-10104733 FORWARD LENGTH=738
Length=738

 Score =  741 bits (401),  Expect = 0.0
 Identities = 452/477 (95%), Gaps = 2/477 (0%)
 Strand=Plus/Plus

Query  3    TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGCCTGGAACACCTTCTAATGCAGCCGTTA  62
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct  69   TAGCCTTCTCGTTAGTCCATGGAGGAGGAGAGTCTGGAACACCTTCTAATGCAGCCGCTA  128

Query  63   CCCCAAGTAGTCCAACCGGAGGATCCAGCGGTTCAAGCGGTTCGGCTCATGGACCTAATT  122
            |||| | ||| ||||||| ||||||||| |||||||| ||||| ||||||||||||||||
Sbjct  129  CCCCGACTAGCCCAACCGAAGGATCCAGTGGTTCAAGTGGTTCAGCTCATGGACCTAATT  188

Query  123  GGGGATATAGTTGGGGATGGGGCTCATCCCCAGGAGGTGGTTATGGCTATGGTTCTGGTT  182
            |||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct  189  GGGGATATAGTTGGGGATGGGGTTCAGCCCCGGGAGGTGGTTATGGCTATGGTTCTGGTT  248

Query  183  CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGTCTGGATTCGGGTTTGGTTCGGGTTCAG  242
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct  249  CGGGTTCGTCACCAGATGGAGGAGGAAAAGGGGCTGGATTCGGGTTTGGTTCGGGGTCAG  308

Query  243  GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG  302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  309  GTTCAGGAACTGGATTTGGGTCTGGCTCGGGAGGAGGAGGAGCCACAGACGGTGGTTCTG  368

Query  303  GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGCAGTGGAAATGGTG  362
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  369  GCCATGGAAGTGGGACCGGACACGCTGGTGAAGGCGGTGGCTCAGGAAGTGGAAATGGTG  428

Query  363  GAGGATCTCCAGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAAAGCTTTCTTGTTAT  422
             ||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct  429  AAGGATCTCCTGGTCGTAGAGAGAGGAGCCAACACCGCTAAAAGAA-GTTTTCTTGTTAT  487

Query  423  TATTACTACCTTAACACAACCATACATGCATAAGAGGATAAGACTCAAAGAAG-AAA  478
            ||||||||||||||||||| || |||||| ||||| ||||||||| ||||||| |||
Sbjct  488  TATTACTACCTTAACACAATCACACATGCGTAAGATGATAAGACTAAAAGAAGGAAA  544



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22756068591


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5