BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946388
Length=1361
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activa... 2108 0.0
AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward re... 93.5 5e-18
> AT4G18160.1 | Symbols: KCO6, ATTPK3, ATKCO6, TPK3 | Ca2+ activated
outward rectifying K+ channel 6 | chr4:10055696-10057736
FORWARD LENGTH=1501
Length=1501
Score = 2108 bits (1141), Expect = 0.0
Identities = 1280/1344 (95%), Gaps = 21/1344 (2%)
Strand=Plus/Plus
Query 24 ATGGCTAACGAAGGAAGTGACCCATTACTTCAATACATGATTAGCCCTAGATTGAAAAAA 83
||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCCAACGAAGGAAGTGACCCTTTACTTCAATACATGATTAGCCCGAGATTGAAAAAA 60
Query 84 CCTCCACAGCTTCTGTTTCCATTACCAGAAGACAACGAAGTCGCGATTCCGATGCCGATG 143
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCTCCACAGCTGCTGTTTCCATTACCAGAAGACAACGAAGTTGCGATTCCGATGCCGATG 120
Query 144 ACACCGTCGGAGTTCAAAGACCGTTTAATCTTCGGACCCTTTTCACGTTCTCCGCGAGAT 203
|||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||
Sbjct 121 ACACCGTCGGAGTTCAAAGAGCGTTTAATCTTCGGACCCTTTTCATGTTCGCCGCGAGAT 180
Query 204 TCGTCTCACTTCATCGATTCCATCTCTCAGAAACAACCCTCACCGTCACCGTCGTCTTCT 263
|||||||||||||||||||||| | ||||| | |||||||||||||||||||
Sbjct 181 TCGTCTCACTTCATCGATTCCA----T--GAAAC-A-----ACCGTCACCGTCGTCTTCT 228
Query 264 TCCACCGCCG-T--TAATCCTTTCTCTGATTCCTCAACCCTAGAGCCTCTGCTT---CCA 317
|| ||||||| | |||||||||||| ||||||||||||||||| ||||||||| |||
Sbjct 229 TCAACCGCCGTTAATAATCCTTTCTCCGATTCCTCAACCCTAGATCCTCTGCTTCCACCA 288
Query 318 CCACCACCACAACCAGAGCCATGGTTTTCCGATCAAAATTCGAGCCATTGTCACGGCCAC 377
|||||||||||||||||||||||||| |||||||||| |||||| || ||||| ||||||
Sbjct 289 CCACCACCACAACCAGAGCCATGGTTGTCCGATCAAACTTCGAGTCACTGTCAAGGCCAC 348
Query 378 GCACTTCACCGATCCAAAACAGCACCAGCAATGGCAGTAATCAATGATCTTCATCACCCA 437
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 349 GCTCTTCACCGATCCAAAACAGCACCAGCAATGGCTGTAATCAATGATCTTCATCACCCA 408
Query 438 ATTCGTCAAAAAGATCCTACAGAGACATCACGATCTGTAGTAAGACAAGCTTTTGCTCTT 497
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 ATTCGTCAAAAAGATCCTACAGAGACGTCACGATCTGTAGTAAGACAAGCTTTTGCTCTT 468
Query 498 CTCGTTGTGTATCTATCTTTAGGTGTGCTTATCTATTGGCTGAATCGTGATCACTACCTT 557
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 469 CTCGTTGTGTATCTCTCTCTAGGTGTGCTTATCTATTGGCTGAATCGTGATCACTACGTT 528
Query 558 GTGAATCAAACCCATCCTGTTGTTGATGGATTATACTTTTGTATCGTTACAATGTGCACC 617
|||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 529 GTGAATCAAACCCATCCTGTAGTTGATGGATTGTATTTTTGTATCGTTACAATGTGCACC 588
Query 618 ATTGGTTATGGAGACATCACTCCAAACAGTGTGGTTACTAAGCTGTTTTCGATTATGTTT 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATTGGTTATGGAGACATCACTCCAAACAGTGTGGTTACTAAGCTGTTTTCGATTATGTTT 648
Query 678 GTGCTTGTTGGGTTTGGTTTCATTGATATTTTGCTTAGTGGGATGGTCTCTTATGTTCTT 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 GTGCTTGTTGGGTTTGGTTTCATTGATATTTTGCTTAGTGGGATGGTCTCTTATGTTCTT 708
Query 738 GACCTTCAAGAGAGCTACATGTTAGACTCTGCTAAGCGGAGAGACGAGCCAGAAAAGAGG 797
||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||||
Sbjct 709 GACCTTCAAGAGAGCTATATGTTAGACTCTGCTAAGCGGAGAGATGAGCCTGAGAAGAGG 768
Query 798 AGATCTTATATAATTGATGTGAAGAAAGGAAGAATGAGGATTAGGTTGAAAGTGGCTTTG 857
|||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 769 AGATCTTATATAATCGATGTCAAGAAAGGGAGAATGAGAATTAGGTTGAAAGTGGCTTTG 828
Query 858 GCATTAGGTGTTGTGGTTTTATGCATTGCTGTTGG-GATTGGGATAATGCATTTCATTGA 916
||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 829 GCATTAGGTGTTGTGGTTTTATGCATTGCTGTTGGTG-TTGGGATTATGCATTTCATTGA 887
Query 917 GGAAATCGGGTGGTTGGATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTTGGGTA 976
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 888 GGAAATCGGGTGGTTGGATTCGTTTTATCTCTCGGTTATGTCGGTTACTACTGTCGGGTA 947
Query 977 TGGAGATCGGGCTTTTAAAACATTGCCCGGTAGGCTTTTCGCTGCGATATGGCTGCTTGT 1036
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGGAGATCGGGCTTTTAAGACATTGCCCGGTAGGCTTTTCGCTGCGATATGGCTGCTTGT 1007
Query 1037 GTCTACATTAGCTGTGGCTCGGGCTTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAG 1096
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GTCTACATTAGCTGTGGCTCGAGCTTTTTTGTACTTGGCTGAGGCGAGAGTGGATAAGAG 1067
Query 1097 GAATAGAGAACGGGCGAAGAAAGTGCTTTGTGAGACAATGTCTGTCTCTCAGTTTTTTGC 1156
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1068 GAATAGAGAACGGGCGAAGAAAGTGCTTTGTGAAACAATGTCTGTCTCTCAGTTTTTCGC 1127
Query 1157 TGCAGATATTGATAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATTTACAAACTGAA 1216
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1128 TGCAGATATTGATAACAATGGCTGTGTGAGTAAAGCAGAGTATGTGATATACAAACTGAA 1187
Query 1217 GGAGATGGAGAAAATAACCGATAAGGACATACTTCCAATCTCCAAACAGTTTGACAAACT 1276
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1188 GGAGATGGAGAAAATAACCGATAAGGACATACTACCAATCTCCAAACAGTTTGACAAACT 1247
Query 1277 CGACCGATGCAGCAACGGAAAGATTACTCTTTTAGATCTCTTGGAAGGTGGCAGTGGCGA 1336
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1248 CGACCGATGCAGCAACGGAAAGATCACTCTTTTAGATCTCTTGGAAGGTGGCAGTGGCGA 1307
Query 1337 TTGATGA-TCCTCTGCAACTTTTT 1359
||||| | ||||||||||||||||
Sbjct 1308 TTGATCAATCCTCTGCAACTTTTT 1331
> AT5G46360.1 | Symbols: KCO3, ATKCO3 | Ca2+ activated outward
rectifying K+ channel 3 | chr5:18806821-18808224 REVERSE LENGTH=910
Length=910
Score = 93.5 bits (50), Expect = 5e-18
Identities = 99/122 (81%), Gaps = 6/122 (5%)
Strand=Plus/Plus
Query 479 AAGACAAGCTTTTGCTCTT-CTCGTTGTGTATCTATCTTTAGGTGTGCTTATCTATTGGC 537
||||||||| ||||| || || ||||||||||| |||||||||||||||||||||||||
Sbjct 291 AAGACAAGCACTTGCT-TTGCTTGTTGTGTATCTCTCTTTAGGTGTGCTTATCTATTGGC 349
Query 538 TGAATCGT-GATCA-CTACCTTGTGAATCAAACCCATCCTGTTGTTGATGGATTATACTT 595
||| || | ||| | | || || | |||| || |||||||||| || || || |||||
Sbjct 350 TGACTC-TAGAT-AGCGACAATGCGTATCAGACTCATCCTGTTGCTGTTGCTTTGTACTT 407
Query 596 TT 597
||
Sbjct 408 TT 409
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67017727575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5