BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946395
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18110.1 | Symbols: | RING/U-box superfamily protein | chr4... 826 0.0
> AT4G18110.1 | Symbols: | RING/U-box superfamily protein | chr4:10037077-10037718
REVERSE LENGTH=642
Length=642
Score = 826 bits (447), Expect = 0.0
Identities = 588/654 (90%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 22 ATGGAGGGCACTTCGACATGGATTCTAAACTATGAATCTACGACGCACATCGTTGATTAC 81
||||||||||| || ||||||||||||||||||||||||| ||| |||||||| ||| ||
Sbjct 1 ATGGAGGGCACATCAACATGGATTCTAAACTATGAATCTAAGACTCACATCGTCGATCAC 60
Query 82 AAAAATTCAGGATCCTTCTCAATAAATATCCAAGGATTTGAGCGGATTCTTATCCGGAGT 141
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 61 AAAAATTCAGGATCCTTCTCAATAAGTATCCAAGGAATTGAGCGGATTCTTATCCGGAGT 120
Query 142 CCTAGCGGTCGTGAAACTTTGGCTCAACAAAAATATCTTGGAGAGAAGAATGCAACAGTA 201
|||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||
Sbjct 121 CCTAGCGGTCGTGAAACTTTGGCTCAACAAAAATCGCTAGGAAAGAAGAATGCAACAGTA 180
Query 202 ACAATCGAATCCGAGATCCCACCT-TCTTTCCTCACTGGAGAAGAAATATGTAGTAGATA 260
| ||||| |||||||||||||||| | ||||||||| |||||||||||||| |||| ||
Sbjct 181 AGAATCGCATCCGAGATCCCACCTGT-TTTCCTCACCGGAGAAGAAATATGCAGTATATT 239
Query 261 TGTGGCTAACGTGTTGTCCAAGGAAAATATCAACAACTGGATTCAGCAAAG-AGTTGTTC 319
|||||||||||||||||||||| ||| |||||||| |||||||||||||| | ||||||
Sbjct 240 TGTGGCTAACGTGTTGTCCAAGTCAAAGATCAACAAGTGGATTCAGCAAAGTA-TTGTTC 298
Query 320 CTAAAATCTGCGAAGACGTGATTAATATAAGTCGCCGCCTTgaagaagaagaagaagaag 379
||||||||||||||||| ||||| ||||||| |||| |||||||||||||||| |||| |
Sbjct 299 CTAAAATCTGCGAAGACCTGATTGATATAAGACGCCACCTTGAAGAAGAAGAAAAAGATG 358
Query 380 GTTTCTTGGTTGAAGCTGAAGTTGAAGTTGTTCTAGAAACATTGTATACTGATTGGTTAA 439
||||||||||||||| | | ||||||||||||||||| ||||||| |||||||||||
Sbjct 359 GTTTCTTGGTTGAAG-T----T-GAAGTTGTTCTAGAAACGTTGTATAGTGATTGGTTAA 412
Query 440 GCTTCAATGATTACGACTCTCAAGGT-GTTCTAATACCAACAGAAGAAGAGTGCATAATA 498
| |||||||||| |||||||||||| || |||||||||| |||||||||||||||||||
Sbjct 413 GAGTCAATGATTATGACTCTCAAGGTTGT-CTAATACCAATAGAAGAAGAGTGCATAATA 471
Query 499 TGTCTAGAAGAGTTATCATCATCAAGTGGTGAGAGGAGGATCATGAATTTGCTTTGTTCC 558
||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 472 TGTCTAGAAGAGTTAGCATCATCAGGTAGTGAGAGGAGGATCATGAAGTTGCTTTGTTCT 531
Query 559 CACAGTTTTCATAAGGATTGTCTTCTCCCGTGGCTGCGAC-GCAAGCGTTCATGTCCAAC 617
|||||||||||||| |||||| ||||||| ||||| || | ||||||| |||||||| ||
Sbjct 532 CACAGTTTTCATAAAGATTGTATTCTCCCCTGGCTACG-CTGCAAGCGATCATGTCCTAC 590
Query 618 TTTTCGTGACGACGTCCACAATCCTCGA-CTAGAAAGAAGACCACCAGGAATGA 670
|| |||||||||| ||||||||| |||| | |||| ||||||||||| ||||||
Sbjct 591 TTGTCGTGACGACATCCACAATCGTCGAGC-AGAA-GAAGACCACCATGAATGA 642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5