BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946399
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18060.1 | Symbols: | SH3 domain-containing protein | chr4:... 1748 0.0
> AT4G18060.1 | Symbols: | SH3 domain-containing protein | chr4:10027480-10029899
REVERSE LENGTH=1481
Length=1481
Score = 1748 bits (946), Expect = 0.0
Identities = 1047/1097 (95%), Gaps = 2/1097 (0%)
Strand=Plus/Plus
Query 1 AATCAAGAGTAGACGTAACAATGGATGCTTTTAGAAGACAAGCGAGCAAGCTTAGGGATC 60
||||||||| ||| || ||||||||||| ||||||||||||||||| |||||||| || |
Sbjct 218 AATCAAGAGGAGAAGTGACAATGGATGCGTTTAGAAGACAAGCGAGTAAGCTTAGAGACC 277
Query 61 AAGTCGCAAAGCAGCAACTGGCTGTGATAAAGCAATTCAGTGGGACTGGCTATGAAAGCT 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 278 AAGTCGCAAAGCAGCAACTGGCTGTGATAAAGCAATTCAGTGGGACTGGTTATGAAAGCT 337
Query 121 CAGATGTAATGGTGATTGATGAGCTAGAAATGCAAAGGCATCATCAACTCGATAAACTTT 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 338 CAGATGTAATGGTGATTGATGAGCTTGAAATGCAAAGGCATCATCAACTCGATAAACTTT 397
Query 181 ACCGCTCTACTCGTTCTGCCAAGGAGTTCCAGAGAGATATTGTTAAAGCCGCTGAGGCAT 240
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 398 ACCGCTCTACTCGTTCTGCAAAGGAGTTCCAGAGAGATATTGTTAAAGCAGCTGAGGCAT 457
Query 241 TTACTTCCATCGGTCTCAGACACATTGAAGCTGGAACCAAGTTGTCTGAAGACTGTTGTA 300
|||| | ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 458 TTACCACGATCGGGCTCAGACACATTGAAGCAGGAACCAAGTTGTCTGAAGACTGTTGTA 517
Query 301 GGTATGGGAACGAAAATAGTCAGAACATCGATGAGAACATTCTGGCCAAGGCTGCAGCTA 360
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 518 GGTATGGGAACGAAAATAGTCAGAACATTGATGAGAATATACTGGCCAAGGCTGCAGCTA 577
Query 361 TATACGGTGATGCTCGGAAACATGTAGACAAAGAACAAGAAGACTTCAACAAGCTTTTGG 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TATACGGTGATGCACGGAAACATGTAGACAAAGAACAAGAAGACTTCAACAAGCTTTTGG 637
Query 421 CTTCTCAGGTTTTGGATCCTCTTAGAGCTATGGTTGCTGGTTCTCCTCTTGAAGATGCTC 480
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 638 CTTCTCAGGTTTTGGATCCTCTAAGAGCTATGGTTGCCGGTTCTCCTCTTGAAGATGCTC 697
Query 481 GCCATCTCGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATGCAACAGAAG 540
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 698 GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATGCAACGGAAG 757
Query 541 TCTCTAGACGACAAGCACGTGTAAGAGAAGCTCCGATTCCAGAAAACGTGGCAAAGCTTC 600
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 758 TCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCAGAAAACGTAGCAAAGCTTC 817
Query 601 AACTAGCGGAAGCAAAAATGCAAGAGCTAAAAGCAAATATGGCGGTTCTCGGTAAAGAAG 660
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 818 AACTAGCGGAAGCAAAAATGCAAGAGCTAAAAGCAAATATGGCAGTCCTTGGTAAAGAAG 877
Query 661 CAACTGCTGCATTGGCTGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTG 720
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 CAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTG 937
Query 721 TGGCTATGGTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 TGGCTATGGTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGACA 997
Query 781 TTGAAGCGGAGATGGTAACCGAGAAACAACACAAAGAATCTGCACCTCCTGCGATCCCAA 840
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 998 TTGAAGCCGAGATGGTAACCGAGAAACAACACAAAGAATCTGCTCCTCCTGCGATTCCAA 1057
Query 841 CAGAGAACGGCTCAGAAAAAACATCATACTTTCTAGCTGAAGTGATTCA-CGCATTTTCT 899
|||||||||||||||| ||||| ||||||||||| |||||||||||||| | |||||||
Sbjct 1058 CAGAGAACGGCTCAGAGAAAACGTCATACTTTCTTGCTGAAGTGATTCATC-CATTTTCC 1116
Query 900 GCTGCTTCAGAGAAAGAATTAGAGTTGGAAAAAGGAGATTACGTCGTTGTTCGAAAGGTG 959
||||||||||||||||| ||||| ||||| |||||||||||| ||||||| |||||||||
Sbjct 1117 GCTGCTTCAGAGAAAGAGTTAGACTTGGACAAAGGAGATTACATCGTTGTCCGAAAGGTG 1176
Query 960 AGTCAAACCGGTTGGGCTGAAGGAGAATGCAAAGGCAAAGCTGGTTGGTTTCCTATGGCT 1019
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1177 AGCCAAACCGGTTGGGCTGAAGGAGAATGCAAAGGCAAAGCTGGTTGGTTTCCTATGGCT 1236
Query 1020 TACATTGAGAAGCGACAGAGACTTCCCACAAACAACTTTTCTGCTGAAGTTTACTGAGTC 1079
||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 1237 TACATTGAGAAGCGACAGAGACTTCCCACTACCAACTTTGCTGCTGAAGTTTACTGAGTC 1296
Query 1080 TCTTCTTCAAAGATTTC 1096
|||||||||||||||||
Sbjct 1297 TCTTCTTCAAAGATTTC 1313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5