BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946413
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 560 7e-159
> AT4G17990.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G17700.1);
Has 134 Blast hits to 131 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9984386-9985805
REVERSE LENGTH=938
Length=938
Score = 560 bits (303), Expect = 7e-159
Identities = 375/410 (91%), Gaps = 4/410 (1%)
Strand=Plus/Plus
Query 1 AGTTGAGAAAATTCGTGACGATGGGAGACGATGAGAAGTGCAGAAAGTTTTGGGATCGAG 60
|||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 57 AGTTGAGAAAATTCGTGACGATGGAAGACGATGAGAAGTGCAGAGAGTTTTGGTCTCGAG 116
Query 61 TGGGGGAATC-CGAGGGGTTCGATGTTGAGCATCTGATGGATAATAAACCAAAATCGTGT 119
||| |||||| | |||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 117 TGGCGGAATCTC-AGGGGTTCGATGTTGAGCATTTGATGGATGACAAACCAAAATCGTGT 175
Query 120 TTGCTCTACTATGAAAATTCTGATTTTGACAGTGAAGTCTTCCTTTATGCAAAGTTGGGG 179
|||||| ||||| ||||||||||||| |||| ||||||||||||| | || |||||||||
Sbjct 176 TTGCTCGACTATCAAAATTCTGATTTCGACACTGAAGTCTTCCTTAACGCCAAGTTGGGG 235
Query 180 ATCCATAAATACAATATGTTACAGGGGACGAATTTGCAGCTCTGTTGCATAGAGAAATGC 239
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 236 ATCCATAAATACAATATGTTACAGGGGACGAATTTGCAGCTCAGTTGCATAGAGAAATGC 295
Query 240 AATACACGAAGTAGCACAGTATATACCGGTTACTCTATAACTTTGGTTGCTAAGGACCCA 299
||| |||||| || |||||||| || |||||||| ||||||||||||||||||||| |||
Sbjct 296 AATTCACGAATTACCACAGTATGTATCGGTTACTATATAACTTTGGTTGCTAAGGATCCA 355
Query 300 TCTGCTGGCGGTTCCCTTGTAACTTTTCAGACCAAGGTTGTTAATGAAGACAATTATAAA 359
|||||||||||||||||||||||||||||||||||||||||| | |||||| ||| ||||
Sbjct 356 TCTGCTGGCGGTTCCCTTGTAACTTTTCAGACCAAGGTTGTTCACGAAGACTATTCTAAA 415
Query 360 ATCAATACCCTGACTGTCTCTATTGCAAGACTTAAGTC-CGAACCACCAC 408
||||||||||| || |||| | |||||||||||||||| | |||||||||
Sbjct 416 ATCAATACCCTCACGGTCTATCTTGCAAGACTTAAGTCGC-AACCACCAC 464
Score = 322 bits (174), Expect = 4e-87
Identities = 221/242 (91%), Gaps = 10/242 (4%)
Strand=Plus/Plus
Query 603 GTAGCGGTAGAAACTGAGGAAAATGTGAAGCCGCCAAATGAGAGACTCAAGGCCAGAAAT 662
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 585 GTAGCTGTAGAAACTGAGGAAAATGTGAAGCAGCCAAATGAGAGACTCAAGGCCAGAAAT 644
Query 663 GCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAAT 704
Query 723 AATGGTCACAAGCCACCCCGTGATCGCGTTGCTAT-AGTAAAAAGAACTATGGACATGAA 781
||||||||||| |||||||||||| | ||||| | |||||||||||||||||||
Sbjct 705 ---GGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT-- 758
Query 782 CAAGGGGCTCCTTAAACTC-ATGTTCGATAATCGGTATGCAAAAACTCTTCTGTAAGGCA 840
|| |||||| || | |||| | |||||||| ||||||||||||||||||||||||||| |
Sbjct 759 CA-GGGGCTTCTCACACTCGA-GTTCGATACTCGGTATGCAAAAACTCTTCTGTAAGGTA 816
Query 841 GT 842
||
Sbjct 817 GT 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41744576157
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5