BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946414

Length=378
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17990.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   231    3e-60


> AT4G17990.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT4G17700.1); 
Has 134 Blast hits to 131 proteins in 2 species: Archae - 
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 134; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9984386-9985805 
REVERSE LENGTH=938
Length=938

 Score =  231 bits (125),  Expect = 3e-60
 Identities = 200/235 (85%), Gaps = 9/235 (4%)
 Strand=Plus/Plus

Query  126  GTAGCGGTAGAAACTGAGGAAAATGTGAAGCCA-CCAAATGAGAGACTCAAGGCCAGAAA  184
            ||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct  585  GTAGCTGTAGAAACTGAGGAAAATGTGAAG-CAGCCAAATGAGAGACTCAAGGCCAGAAA  643

Query  185  TGCAGTTTTCTACATAAGGTACATGTACTACCCGAATAAGGGTCGGGCTCCTACGGGTCA  244
            |||||||||||||||| |||||| ||||||||| |||||||| |||||||||| |||| |
Sbjct  644  TGCAGTTTTCTACATACGGTACAGGTACTACCCTAATAAGGGACGGGCTCCTAAGGGTAA  703

Query  245  TTGTCACAAACCTCCCCGTGATCGCGTAGCTAT-AGTAAAAAGAACCATGGACAAGAACA  303
            | ||||||| ||||||||||||||| | ||||| | |||||||||| |||||||    ||
Sbjct  704  TGGTCACAAGCCTCCCCGTGATCGCATCGCTATCA-TAAAAAGAACTATGGACATT--CA  760

Query  304  CCGGATACTTCACTCTCGAGTTCGAGGG-CAGGTTTTCAAAATCTCTTTTGTAAG  357
              || | || ||| |||||||||||    | ||| | ||||| ||||| ||||||
Sbjct  761  GGGGCTTCT-CACACTCGAGTTCGATACTC-GGTATGCAAAAACTCTTCTGTAAG  813



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17794783146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5