BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg946417

Length=508
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G17960.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   761    0.0  


> AT4G17960.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G46620.1); 
Has 46 Blast hits to 45 proteins in 13 species: Archae - 0; 
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses 
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr4:9970847-9972457 
FORWARD LENGTH=1002
Length=1002

 Score =  761 bits (412),  Expect = 0.0
 Identities = 471/499 (94%), Gaps = 6/499 (1%)
 Strand=Plus/Plus

Query  12   AAGGATT-GGAATGGGGTTTTTCAAGAAATTGGCTGGTGTGTTTGGATTTGGCCAGGAAG  70
            ||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct  298  AAGGATTAGG-ATGGGTTTTTTCAAGAAATTAGCTGGTGTGTTTGGATTTGGCCAGGAAG  356

Query  71   TGTTGAAAAATGAGGAAGATGATATTAATGTTTCCCGTGACGGAGATAATCAGAC-GAGA  129
            | |||||||||||||||||||||||| |||||| | ||||||||| ||||||| | ||||
Sbjct  357  TATTGAAAAATGAGGAAGATGATATTGATGTTTACGGTGACGGAGGTAATCAG-CAGAGA  415

Query  130  TTTCGTGAAACTGGATTACCAAGGAAAGGATTTGGAGTTCCGGTTCAAGTTGCTGTCGAA  189
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  416  TTTCGTGAAACTGGATTACCAAGGAAAGGATTTGGAGTTCCGGTTCAAGTTGCTGTCGAA  475

Query  190  AGATCTCAACTTGGTCCTCTTCTTCAGCCATGCGCCAATGGAGACGGTGGTATTCAGGGA  249
            || |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct  476  AGGTCTCAACTTGGTCCTCTTCTTCAGCCTTGCGCCAATGGAGATGGTGGTATTCAGGGA  535

Query  250  CTAAGATGGTATACAAAACGGCTAAGAGTTGATGACGATGGAGATGTTGCAGATGAGTTT  309
            || |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct  536  CTGAGATGGTACACAAAACGGCTAAGGGTTGATGAAGATGGAGATGTTGCAGATGAGTTT  595

Query  310  TTGGAAGAGGGAGAGAAACCGACTAACGCAGAAGATGATCATAACTGTATTAGGACTATG  369
            |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct  596  TTGGAAGAAGGAGAGAAATCGACTAACGCAGAAGATGATCATAACTGTATTAAGACTATG  655

Query  370  CCAAGACTCCAAATTAAACGCAAAACGAAACCTGTAAAAGTAAGAGGACTAGTTGTGTCT  429
            |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  656  CCAAGATTCCAAATTAAACGCAAAACGAAGCCTGTAAAAGTAAGAGGACTAGTTGTGTCT  715

Query  430  TCTGATGGGAAACTCCAGCAATGCATTGAACATCATGGAAGGTTATTTATAGTATGAAT-  488
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct  716  TCTGATGGGAAACTCCAGCAATGCATTGAACATCAAGGAAGGTTATTTATAGTATGAATT  775

Query  489  GATTTTGCA-ACAGAGAAG  506
            | ||||| | |||||||||
Sbjct  776  GTTTTTGAACACAGAGAAG  794



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24263093001


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5