BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg946418
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT4G17950.1 | Symbols: | AT hook motif DNA-binding family prot... 1803 0.0
AT5G46640.1 | Symbols: | AT hook motif DNA-binding family prot... 377 1e-103
AT4G39925.1 | Symbols: | AT hook motif DNA-binding family prot... 135 7e-31
> AT4G17950.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:9966990-9969232 REVERSE LENGTH=1850
Length=1850
Score = 1803 bits (976), Expect = 0.0
Identities = 1191/1284 (93%), Gaps = 57/1284 (4%)
Strand=Plus/Plus
Query 1 ACAACAACAACCACCGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCC 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 ACAGCAACAACCACCGCCAGGGATGTTAATGAGTCACCACAATTCCTACAATCGAAACCC 371
Query 61 TAAcgccgccgccgccgccgTGTTAATGGGTCACAACACCTCCACATCTCAAGCTATGCA 120
||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 372 TAA---CGCCGCCGCCGCTGTTTTAATGGGTCACAACACCTCCACATCTCAAGCTATGCA 428
Query 121 TCAGCGATTACC-TTT--TGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCA 177
||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 TCAAAGATTACCTTTTGGTGGTTCTATGTCACCGCATCAGCCTCAACAACATCAGTATCA 488
Query 178 TCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTGATGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 TCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTGATGG 548
Query 238 ATCGCCTTCTTCTGTTGCCGCAACGACTCAACAACAGTCGATGAGATTTGGGATCGACCA 297
||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||
Sbjct 549 ATCGCCTTCTTCTGTTGCCGC--C-ACTCAACAACATTCGATGAGATTTGGGATCGACCA 605
Query 298 TCAACAGGTGAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGA------------ 345
||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 606 TCAACAGGTTAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTGGTGG 665
Query 346 ---TGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTACAGC 402
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 666 TGGTGGTGGTGGTAGTAACATTGCTCTTGGTTTGGCTCCTACTTCGCCTCTTCCTTCTGC 725
Query 403 TTCTAATTCATACGGTGGTGGAAATGAAGGTGGTGGTACTGGTGGTGATAGCGGCGGAGC 462
||||||||| |||||||||||||||||||| ||||| |||||||||||||| ||||||
Sbjct 726 TTCTAATTCTTACGGTGGTGGAAATGAAGGAGGTGG---TGGTGGTGATAGCGCCGGAGC 782
Query 463 TAATGCGAACTCTTCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGG 522
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TAATGCTAACTCTTCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGG 842
Query 523 TAAGAAGCAGCTTGACGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACACCTCATGTCAT 582
|||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 843 TAAGAAGCAGCTCGATGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACGCCTCATGTCAT 902
Query 583 TGAGGTTAAAACAGGAGAGGACATAGCTATGAAGGTAATGGCGTTTACGAACCAAGGGCC 642
||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||
Sbjct 903 TGAGGTTAAAACAGGAGAGGACATAGCTACGAAGATATTGGCGTTTACGAACCAAGGGCC 962
Query 643 ACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGAAACTTCGTCAAGC 702
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 963 ACGCGCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTAATGTGATGCTTCGTCAAGC 1022
Query 703 T-AC-----CAATCCTAGTGGAATTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCT 756
| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1023 TAACAATAGCAATCCTACTGGAACTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCT 1082
Query 757 GTCAGGTTCTTTTTTGAATTCTGAGAGTAATGGTACTGTGACCAAAACTGGTAACTTGAG 816
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GTCAGGTTCTTTCTTGAATTCTGAGAGTAATGGTACTGTGACCAAAACTGGTAACTTGAG 1142
Query 817 TGTGTCGCTGGCTGGACAAGATGGCGGGATTGTGGGTGGAAGTGTTGCTGGAATGCTAGT 876
|||||||||||||||||| || ||| |||||||||||||| |||||| ||||||||||||
Sbjct 1143 TGTGTCGCTGGCTGGACACGAAGGCCGGATTGTGGGTGGATGTGTTGATGGAATGCTAGT 1202
Query 877 AGCTGGATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAA 936
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 AGCTGGATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAA 1262
Query 937 ACAAAGCGCAGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTT 996
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 ACAAAGTGCGGGGCGTGCTCAGAATACTCCGGAGCCAGCTTCAGCACCAGCCAATATGTT 1322
Query 997 GAGCTTtggtggtggtggtggtggACCAGGAAGCCCTCGATCTCAAGGACAACAACACTC 1056
|||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1323 GAGCTTTGGTGGTG-T--TGGTGGACCGGGAAGCCCTCGATCTCAAGGACAACAACACTC 1379
Query 1057 AAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGTGGAAGcaacaacaa 1116
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1380 GAGCGAGTCATCAGAGGAAAACGAAAGTAATTCTCCGTTGCACCGTAGAAGCAACAACAA 1439
Query 1117 caataacaacagcaacaacaacaacaaTAATCATGGGCTATTTGGAAACTCTACACCTCA 1176
||| || ||||||| | |||||| ||||||||||||||||||||||
Sbjct 1440 CAA---CA---GCAACAA---------T---CATGGGATATTTGGAAACTCTACACCTCA 1481
Query 1177 ACCGCTTCACCAAATTCCTATGCAGATGTACCA---TCTCTGGCCTGGCAGCAGTCCTCA 1233
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1482 ACCGCTTCACCAAATTCCTATGCAGATGTACCAGAATCTCTGGCCTGGCAACAGTCCTCA 1541
Query 1234 ATAAACAGATGGTTCATGGGTCAA 1257
||||||||||||||||||||||||
Sbjct 1542 ATAAACAGATGGTTCATGGGTCAA 1565
> AT5G46640.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:18924477-18926575 FORWARD LENGTH=1637
Length=1637
Score = 377 bits (204), Expect = 1e-103
Identities = 598/780 (77%), Gaps = 60/780 (8%)
Strand=Plus/Plus
Query 178 TCATCCTCAGCCTCAGCAACAGATAGATCAGAAGACTCTTGAATCTCTTGGATTTG---A 234
||||| |||| || ||||| || ||||||||||||||||||||||||||||||| |
Sbjct 373 TCATCAGCAGCAACAACAACAAATGGATCAGAAGACTCTTGAATCTCTTGGATTTGGTGA 432
Query 235 TGGATCGCCTTCTTCTGTTGCCGCAA-CGACTCAACAACAGTCGATGAGATTTGGGATCG 293
|||||| ||||||||| ||| | ||| || | ||||||| | | |||
Sbjct 433 TGGATCACCTTCTTCTCAA-CCG-ATGCGATTCGGGA----TCGATGA--TCAGA-ATC- 482
Query 294 ACCATCAACAGGTGAAGAAGAAACGAGGTAGACCTAGGAAGTATGCTGCTGATGGTGGTG 353
| || | || ||||||||||| ||||| || || || |||||| || ||||||||
Sbjct 483 AGCAACTGCAAGTGAAGAAGAAGCGAGGAAGGCCGAGAAAGTATACTCCTGATGGT---- 538
Query 354 GTAGTAACATTGCTCTT-GGTTTGGCTCCTACTTCGCCTCTTC-CTA--CAGCTTCTAAT 409
|| ||||||| || ||||| |||||||| || ||||||| || |||||||||||
Sbjct 539 --AG---CATTGCT-TTAGGTTTAGCTCCTACGTCTCCTCTTCTCTCTGCAGCTTCTAAT 592
Query 410 TCATACGGTGGTGGAAATGAAGGTGGTGGTACTGGTGGTGATAGCGGCGGAGCTAATGCG 469
|| ||||||| | | ||||||| | ||| | |||| || ||| |||| |
Sbjct 593 TCTTACGGTG----A---G--GGTGGTG-T--TGGAG---ATAGTGGTGGA---AATG-G 633
Query 470 AA-CTCT-TCCGATCCACCTGCTAAACGGAACAGAGGACGTCCTCCTGGCTCCGGTAAGA 527
|| |||| | |||||||||| |||||| ||||||||| | |||||||| || ||||||
Sbjct 634 AAACTCTGTT-GATCCACCTGTTAAACGTAACAGAGGAAGGCCTCCTGGTTCTAGTAAGA 692
Query 528 AGCAGCTTGACGCTTTAGGAGGAACAGGAGGAGTTGGGTTCACACCTCATGTCATTGAGG 587
| |||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |
Sbjct 693 AACAGCTTGATGCTTTAGGAGGAACTTCAGGAGTTGGGTTTACACCTCATGTCATTGAAG 752
Query 588 TTAAAACAGGAGAGGACATAGCTATGAA-GGTAATGGCGTTTACGAACCAAGGGCCACGC 646
| || ||||||||||||||||| | || ||| ||||| ||| || | |||||| || |
Sbjct 753 TGAACACAGGAGAGGACATAGCG-TCAAAGGTGATGGCTTTTTCGGATCAAGGGTCAAGA 811
Query 647 GCAATCTGTATTCTCTCAGCTACAGGAGCTGTAACTA-ATGTGAAACTTCGTCAAGCTAC 705
|||| ||||||||||| || | || || || ||| | |||| |||||||||||| |
Sbjct 812 ACAATTTGTATTCTCTCTGCAAGTGGTGCAGTTTCTAGA-GTGATGCTTCGTCAAGCTTC 870
Query 706 -CAATCCTAGTGGAATTGTTAAGTATGAGGGCCGATTTGAAATCATTTCTCTGTCAGGTT 764
|| || ||||||||| |||| |||||||| |||||||| |||||| |||| ||||| |
Sbjct 871 TCATTC-TAGTGGAATCGTTACTTATGAGGGACGATTTGAGATCATTACTCTCTCAGGCT 929
Query 765 CTTTTTTGAATTCTGAGAGTAA-TGGTACTGTGACCAAAACTGGTAACTTGAGTGTGTCG 823
| | ||||||| |||| |||| |||| | | || || |||||||||||||||| |
Sbjct 930 CAGTCTTGAATTATGAG-GTAAATGGTTCCACCAACAGAAGTGGTAACTTGAGTGTGGCT 988
Query 824 CTGGCTGGACAAGATGGCGGGATTGTGGGTGGAAGTGTTGCTGG-AATGCTAGTAGCTGG 882
||||||||| |||||||| || || ||||| ||||| | ||| ||| ||||||||||
Sbjct 989 TTGGCTGGACCTGATGGCGGCATCGTAGGTGGCAGTGTAGTTGGTAAT-CTAGTAGCTGC 1047
Query 883 ATCACAAGTCCAGGTCATTGTGGGAAGCTTTGTACCAGATGGAAGGAAGCAGAAACAAAG 942
| ||||||||||||| || |||||||||||||| |||| | || ||| | |||||||||
Sbjct 1048 AACACAAGTCCAGGTGATAGTGGGAAGCTTTGTTGCAGAAGCAAAGAAACCGAAACAAAG 1107
> AT4G39925.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:18517409-18518052 REVERSE LENGTH=429
Length=429
Score = 135 bits (73), Expect = 7e-31
Identities = 102/115 (89%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 680 ACTAATGTGAAACTTCGTCAAGCT-AC-----CAATCCTAGTGGAATTGTTAAGTATGAG 733
|||||||||| |||||||||||| || |||||||| ||||| |||||||||||||
Sbjct 22 ACTAATGTGATGCTTCGTCAAGCTAACAATAGCAATCCTACTGGAACTGTTAAGTATGAG 81
Query 734 GGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTTTTGAATTCTGAGAGTAATG 788
||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 82 GGCCGATTTGAAATCATTTCTCTGTCAGGTTCTTTCTTAAATTCTGAGAGAAATG 136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5